barSeed - Barley Seed Development Database

Probe CUST_37761_PI390587928

Source Contig U35_10691

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37761_PI390587928	Hv_44K_v2	CTGTGTCTGATGGGATGCTGCTCATGTACAAACTAACCCTGCCTGCTTGCTTGTAAAAAA	301	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248373.1	1296	2e-24	1174 - 1233	100	60 / 60	plus	ABC10338
MLOC	MLOC_13153.1	496	2e-24	392 - 451	100	60 / 60	plus	None
MLOC	MLOC_13152.1	623	2e-24	518 - 577	100	60 / 60	plus	None
JLOC1	JLOC1_8871.1	806	8e-25	528 - 587	100	60 / 60	plus
Harvest35	U35_10691	426	3e-25	302 - 361	100	60 / 60	plus

Contig Sequence (426 bp)

>U35_10691 426 Hv_44K_v2
GGCACCCGTGGATCGTGAGCGGAGGAGGGGCCCGANAGGCGGTGCAGCCAACCTAAGGAG
GCCCGTAGCAGGCCCACGTACGTCGACTGTTCCCGTGGAGAGATAACGTGTCTAGCGTCT
TTGTATATGCGACGAGAGTGTGCGAAGTATCAGTAGTAGTGGTGGTAGTAGGGAGCTTCT
GGTGCCATTGTATAAATCCAGAGTGCCGACGAGCCAGCCAGGGGTTCGGCTGTAGCTATC
TTTTCTTTTTCTGGGCTTTTTTTTGCTGCCTTGGTTAAGAGAACGCCTGCCTGTTCGGTT
TCTGTGTCTGATGGGATGCTGCTCATGTACAAACTAACCCTGCCTGCTTGCTTGTAAAAA
AATCGAGTACCAGTACTAAATAAGCTGATCTCTGTTCCGTTTTCCCGTTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_10691 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None