barSeed - Barley Seed Development Database

Probe CUST_37758_PI390587928

Source Contig U35_10694

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37758_PI390587928	Hv_44K_v2	TCCATCAGTGGTGGTGATTCGATTCCGCGAGCAGCAGCAAGATGTTGGAGAAGAAGGCCG	224	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354087	2364	2e-24	250 - 309	100	60 / 60	plus	ABC22781
MLOC	MLOC_16230.2	1608	2e-24	348 - 407	100	60 / 60	plus	None
MLOC	MLOC_16230.3	1896	2e-24	620 - 679	100	60 / 60	plus	None
MLOC	MLOC_16230.1	2696	2e-24	515 - 574	100	60 / 60	plus	None
JLOC1	JLOC1_11166.1	3289	8e-25	448 - 507	100	60 / 60	plus
Harvest21	ABC24482	395	3e-25	225 - 284	100	60 / 60	plus
Harvest35	U35_10694	396	3e-25	225 - 284	100	60 / 60	plus

Contig Sequence (396 bp)

>U35_10694 396 Hv_44K_v2
GCGCTGCCCGCTCCGTGTGTGTGTCCTCTCCTCTCCTCGCGCCTAGGTGTTTGAGCGGAG
GGGCAAAAGGACGGAGACGCGGGCGCCTCGCCTCCTCCCCGCGCCGTGCTTTGTCCGTTG
CCGCGGCGCGACTAGCCGCCGTCGTCTTCCCGGCCCCGCGGCGGACGCCCCGAGCGGCTC
GCAGCAGGTTGGAACTGGAACCCAACTGAGGTAGAGAGCATCACTCCATCAGTGGTGGTG
ATTCGATTCCGCGAGCAGCAGCAAGATGTTGGAGAAGAAGGCCGGCGAGTTCAGCGGCGA
GATGGTGATCGCCGAGTTCGAGCGGCTGACACGTGACGCCGACATTGTGCAGCAGGAGAC
GCTGCGGCGGATCCTTGCCGAGAATGGCGCCACCGA

Homology of Contig U35_10694 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None