barSeed - Barley Seed Development Database

Probe CUST_37755_PI390587928

Source Contig U35_10696

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37755_PI390587928	Hv_44K_v2	GCTGATAGTAAACTTGTCATAAAAAACCCAGAAGTGAACCATTGTGAAAAATGTCCCTAA	666	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44354.3	9670	2e-24	7038 - 7097	100	60 / 60	plus	ABC18988 ABC49862
MLOC	MLOC_44354.5	6342	2e-24	5903 - 5962	100	60 / 60	plus	ABC49862
MLOC	MLOC_44354.6	6931	2e-24	5562 - 5621	100	60 / 60	plus	ABC18988 ABC49862
MLOC	MLOC_44354.1	6050	2e-24	5493 - 5552	100	60 / 60	plus	ABC49862
MLOC	MLOC_44354.2	8428	2e-24	7039 - 7098	100	60 / 60	plus	ABC18988 ABC49862
JLOC1	JLOC1_28745.2	7163	8e-25	5775 - 5834	100	60 / 60	plus
Harvest21	ABC23124	732	3e-25	667 - 726	100	60 / 60	plus
Harvest35	U35_10696	732	3e-25	667 - 726	100	60 / 60	plus

Contig Sequence (732 bp)

>U35_10696 732 Hv_44K_v2
GGGCAGTTGCTGACGTTGAAAAAAAGAGAGGAGAAAAACGGAAACGGCAGTATCTCCATC
ATACTCGAAGAAATGATCAATACTCTTTATCTGTTGCTGACAATCAGTTAAGAAACAACA
ATCAAGCGTCTTCAGATTTGAGGAGGTCGTCATCTTGCAATGGATATGTGCGTGTTAGCA
AAGGTAACCAACTGGTTAGAAACCCCAAAAAAGTAATTCGCATGCTAGCAAATGAGAAAG
TTCGATGGAGTTTGCACACTGTTCGATCACGCCTGGCAAAGAAACAACAGTACTGTCAAT
TCTTCACTCGGTTTGGCGAGTGCAAGAAGCCTGAGGGCGAGTGTCGCTATATTCATGACC
GTGCTAAAGTGACTATCTGCACTAAATTTCTTAAAGGCCTGTGTTCTGACACTAGCTGTA
AACTCACACACAAGGTCCTCCCAGAAAGAATGCAAGATTGTTCTTATTTTCTGAAAGGTC
TCTGTACCAACACAGCTTGTCCCTATAGGCATGTTAAAGTGAACTCCAATGCTCCTGCGT
GTGAAGATTTTCTGAAGGGATACTGTGCAGATGGTGATGAGGTACTTAATGATATTATTA
CTGAAATCTACCAACCTTATTCAAGTATTACTATTGCTAGGAGTGAATTCAGCATTGTCC
TCAACAGCTGATAGTAAACTTGTCATAAAAAACCCAGAAGTGAACCATTGTGAAAAATGT
CCCTAATGTGAA

Homology of Contig U35_10696 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g43120.1	1891	3e-68	protein\|zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Brachypodium v1_2	Bradi1g30260.2	2003	2e-107
Arabidopsis v10	AT1G21580.1	2166	9e-66	Zinc finger C-x8-C-x5-C-x3-H type family protein \| chr1:7557822-7565655 REVERSE LENGTH=2166