barSeed - Barley Seed Development Database

Probe CUST_37752_PI390587928

Source Contig U35_10698

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37752_PI390587928	Hv_44K_v2	GCACCAATATGTAACAGGCCAATAATGGAAATCATGAGCCATTGCTCTTGATCAAAGTTT	561	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.651	2.493	1.226	0.713	0.405	0.505
Raw	356.472	386.810	165.927	148.143	29.093	41.002

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69715.1	4314	2e-24	32 - 91	100	60 / 60	minus	ABC29973
MLOC	MLOC_69714.10	2916	2e-24	1816 - 1875	100	60 / 60	minus	ABC29973 ABC38776 ABC39830
MLOC	MLOC_69715.2	4158	2e-23	1 - 58	100	58 / 58	minus	ABC29973
MLOC	MLOC_69715.3	4274	7e-23	1 - 57	100	57 / 57	minus	ABC29973
JLOC1	JLOC1_46216.2	4082	8e-25	3990 - 4049	100	60 / 60	plus
JLOC1	JLOC1_46216.1	4190	8e-25	4098 - 4157	100	60 / 60	plus
Harvest35	U35_10698	638	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_10698 638 Hv_44K_v2
GCGAGAAATGGTTATGCTATGGAGGCGCCGCAGGCATCATCCGTTGTCAGAGGATCTAAA
AGGCAAGCATAATTGGGAAGTGTTTTGTCCCACCTAGTTTGTTGCATGTTTGCCGCAGAC
CAGGGTCATCCGTGTATATCCACCTACACAATAAGCTGTTGCAGCACTTGCTGTTACTTG
CAGCAACATATGGTATGTTCGTCCGATTCTTTCCTTGACCTTTCAAGGGGTTGCCATTGC
AGACGTTCAGTTATGCACAATTATACTTACATAACAGAGCTGTGTATCTTAGGAACTCCC
AGCAGATCCTTGTAGTTTAGGAACTCAAGTTCAGGCAATATGAGCTACCAGGTCCTGCAT
ATCTTGGGCTCAGCAAATCATAGTTCTGAGAATAAAGTGCACCAGTCTCGAATAAGTGTG
GGCTTGTCCGCAACTTTTCTGAATCTGGTGAAAGTTTTTTTTTTCATGTAAGGCTGTAAC
ATATGTACATCTATTGTTTACGCAGTCACACAAATACAGTAATGTCGTGCCAGTTGTAAC
ATTGACAAACTGAACAATGTCGCACCAATATGTAACAGGCCAATAATGGAAATCATGAGC
CATTGCTCTTGATCAAAGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_10698 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None