barSeed - Barley Seed Development Database

Probe CUST_3774_PI390587928

Source Contig U35_14362

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3774_PI390587928	Hv_44K_v2	GGGAAATCACATTATTATTCTGAGATATCTGTATTGCTCCACCAGATATGTATGTTCTTG	456	GeneList: red MasterList: Thioredoxin_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.296	1.606	1.205	0.835	0.310	0.300
Raw	3281.467	6392.683	4176.073	4587.583	589.146	623.388

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56412.1	733	7e-23	499 - 558	98	59 / 60	plus	ABC32852
JLOC1	JLOC1_36478.1	752	4e-23	530 - 589	98	59 / 60	plus
Harvest21	ABC40193	542	3e-25	27 - 86	100	60 / 60	minus
Harvest21	ABC09940	1441	1e-23	1324 - 1383	98	59 / 60	plus
Harvest21	ABC32852	474	6e-22	387 - 447	97	59 / 61	plus	ABC32852
Harvest35	U35_14362	542	3e-25	457 - 516	100	60 / 60	plus
Harvest35	U35_14364	1503	1e-23	1362 - 1421	98	59 / 60	plus

Contig Sequence (542 bp)

>U35_14362 542 Hv_44K_v2
GCCATCGGGCATGAGCCGGCCACCAAGTTTCTCAATGGGCAGCTTGAGCTCCATGCCGAT
GGGTATGTGGCCACCAAGCCGGGCTCTACACATACCAGTGTGGAGGGGGTCTTTGCTGCT
GGAGACGTGCAGGATAAGAAGTATCGTCAGGCCATTACTGCTGTTGGATCAGGTTGCATG
GCTGCTTTGGACGCCGAGCACTATCTGCAGGAGGTGGGTGCACAGGTGGGCAAGTCTGAT
TGACTCTTTTCTGGTCAAGCGACGGTCATCAGCTCGCCGAAAGCCGCACTCTGAGCTTGA
TGAGGTTGGTTGTCCAATTCTTCAACTGTTTCATTATGCTGCTTTGCAGCACCGCATTAT
TCTCCTGTCATTAGGCCCTAGATGAACTTCCATTGGTGCTGGAAATGATTCATATTTATC
ATTGGTGGAACTCAAACTGATTCTTATGTATCATTGGGGAAATCACATTATTATTCTGAG
ATATCTGTATTGCTCCACCAGATATGTATGTTCTTGTATTTTTCTAAAAAAAAAAAAAAA
AA

Homology of Contig U35_14362 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None