barSeed - Barley Seed Development Database

Probe CUST_37748_PI390587928

Source Contig U35_22670

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37748_PI390587928	Hv_44K_v2	TTCATTCTTGTGCAGAAACAGTTCCGATCCTAAAGGGTGCCTCCTGACTTCTAAACCAAA	1031	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.378	0.420	0.897	1.533	1.263	1.883
Raw	6.437	9.851	22.362	54.436	16.902	27.084

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_22670	1101	3e-25	1032 - 1091	100	60 / 60	plus

Contig Sequence (1101 bp)

>U35_22670 1101 Hv_44K_v2
GTCGCCGATTACTCGACATCATTGTTGTTCCCTCCTTCCGCCAATCGATCGTCCCTCTAT
CTATATCGTCCAAGTCAGGTCTCCGCGCTGGGTGGGGACGTATCGAAACGATGGAGGACT
TCGTGCTGAGCTACGTGGTGACCGGGCTGGCCTTTTGGTCGACGGCGTTCCTGGTGATGC
GGGCGCTGATGCCGAAGCGCTCCTACGAGTTCTGCAACCGCGCCGTCTCCACCGTGCACG
CCGTCGCTGCCGTCTGCATGGCCTGCCTCTCCGTGGAGGACTGGTCCTGCCCCGTCTGCC
CCCTCAACGCCCCCTCCTCGCCGCGCCAGATGAAGTCCCTGGCGGTGACGCTGTCGTACA
TGATCTACGACGCCGTGTGCAGCCATCTCAACGGTGACGTCCGGCTCGACAACACCGTGC
ACCACCTGGTCAGCATCGTCGGCATCGGCGCCGGCCTCGCCTACCAGAGGTGCGGCACGG
AGATGATGGCGTGCATGTTCATCACGGAGATCTCCAGCCCGCTGCTGCACCTCAGGGAGA
TGCTCAAGGAGCTCGGCATCAAGGACACGGACCTCAACCTCCTCGTCGACATTCTATTTG
CGGCGACCTTTTCGGTGGGACGGATGGTTGGTGGACCGTACCTCACCTACGTCACCTTGA
CAACAGACTACCCCATCCTCATCAAGGCGATGGCTGCGGGTTTGCAACTGGTAAGCGTCT
ACTGGTTCTTGAGGATCCTCAGGATGGTCAGGTACAAGCTCGGGAAGAAGAGGCCGGCGG
CGGCGGCGGCGACCAAGGTCAATGCAAAGTGATCGATCCATGTATATACATATCTTGCAT
GCAACCTTGAGCAGATTACTTGCTTTCTGGCGGGATGAGATCGATCGGTCGTTTGTATGT
ACAAACACGTTGTGTTTGCGCGATTCTAGCTAAGAGAAAAGGATCATTCATGTAGCATAT
CTACTGTTGTTCCATTGACAAGCATCTTTTCAACAAAGGATGCATATACATATACGCTGT
AGCAATTCAATTTCATTCTTGTGCAGAAACAGTTCCGATCCTAAAGGGTGCCTCCTGACT
TCTAAACCAAAAAAAAAAAAA

Homology of Contig U35_22670 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g15770.1	236	5e-109	protein\|transmembrane protein 136, putative, expressed
Brachypodium v1_2	Bradi2g09580.1	237	3e-132
Arabidopsis v10	AT1G35180.1	231	3e-85	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein \| chr1:12877230-12878644 REVERSE LENGTH=231