barSeed - Barley Seed Development Database

Probe CUST_3773_PI390587928

Source Contig U35_14363

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3773_PI390587928	Hv_44K_v2	TCAGGGCAAGTTTGCAAAATTATACCTGGTTAGCTCTCAACTCTCAAATATACATCAAAT	1039	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20847.1	3370	2e-24	1661 - 1720	100	60 / 60	minus	ABC01442 ABC01443 ABC14301 ABC52457
JLOC1	JLOC1_14450.2	1598	8e-25	1534 - 1593	100	60 / 60	plus
JLOC1	JLOC1_14450.1	1126	8e-25	1062 - 1121	100	60 / 60	plus
Harvest35	U35_14363	1125	3e-25	1040 - 1099	100	60 / 60	plus

Contig Sequence (1125 bp)

>U35_14363 1125 Hv_44K_v2
CTGGTGACGCCCCCAATCGAGCCGAGCTCCTCGCGATTCCCAATCCCCGCACGCCTCCTC
CTCCGGCCCCGCCGCCGCCGCCGCCGCCTCGCCTCAGGCTCACAGTTGTTCAAGATGGAA
CACAAGGAGGCGGGTTGCCAGCAGCCAGAGGGCCCAATCCTATGCGTTAATAACTGCGGC
TTCTTTGGCAGTGCCGCGACCATGAACATGTGCTCCAAGTGCCACAAGGAGATGGTCATG
AAGGAGGAACAGGCCAAGCTGGCTGCCTCCTCCTTTGATAGCATTGTTAACGGTGGCGAC
GGTGGGAAAGCACCTGTTGTTGTTGCGGCTGTGGCTGCGAGCGCTGAGGTGGCGGTTGCT
CAAGTTGACGTGAAGGCACTCGTTGTGCAGCCTGCTGCTGATGTTGCAGGCACTAGCGAA
GCTGTTGCCGTGAGCCCCAAGAGGAAGGAGGGGCCGAATCGGTGCTCAACTTGCAGGAAG
AGGGTTGGGCTAACGGGATTCAACTGCAGATGCGGTAACATGTACTGTTCGCTGCACCGC
TATTCCGACAAGCATGACTGCCAGTTCGACTACCGGACTGCAGCTAGGGATGCCATCGCC
AAGGCCAACCCAGTGGTGAAGGCAGAGAAGCTCGACAAGATTTAGGTGTCCTACAGGGAA
GAAATGGTTGCAATCTGCCAAGGTTCATCATCCATCTTTGCTGTGCCATCCTTGCACCTC
CCTTTCTTGTTGGCTGCCACATTTCCTAAATTGTACGGCATCGTGATGCACACTGCGTCG
TGGCAGCTGCAAGAACTCAATCCTCTCAGTCATTCCGAATGGTTTGCGTGTTGTGTAACT
TTATTCATGGTGGTTTTTTCGGTCAGTATTGTGGCTTCTCATTTTAGCTAGCTCTGTTTA
TGTACTATTGTCCCATGTGTGTTAAATTCTGATCAGTAATAGTAACCAGCAATGGTTCAT
CAAAAAAAAAAAAAAAAAATTTCACATATTTGAGTATGTTGAATCATGTTTATGGTTGTA
TAGTTGGTGTTGTTTTTCATCAGGGCAAGTTTGCAAAATTATACCTGGTTAGCTCTCAAC
TCTCAAATATACATCAAATTTGAAGCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14363 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10200.1	174	2e-95	protein\|zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed
Brachypodium v1_2	Bradi3g07060.2	172	3e-97
Arabidopsis v10	AT1G51200.1	173	1e-55	A20/AN1-like zinc finger family protein \| chr1:18985690-18986211 FORWARD LENGTH=173