barSeed - Barley Seed Development Database

Probe CUST_37733_PI390587928

Source Contig U35_21655

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37733_PI390587928	Hv_44K_v2	TGCCAAGAGAGCTAATGTCTCCTGTTCTCCAGATGATTCAATACAGTACACTTAACTTAA	514	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.413	0.945	1.346	1.143	0.885	0.527
Raw	64.425	59.013	83.939	102.544	29.744	19.744

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71794.2	2418	2e-24	384 - 443	100	60 / 60	plus	ABC12896
MLOC	MLOC_71794.3	2255	2e-24	360 - 419	100	60 / 60	plus	ABC12896
JLOC1	JLOC1_47738.3	2348	8e-25	369 - 428	100	60 / 60	plus
JLOC1	JLOC1_47738.2	2406	8e-25	427 - 486	100	60 / 60	plus
JLOC1	JLOC1_47738.1	2415	8e-25	439 - 498	100	60 / 60	plus
Harvest21	ABC15370	577	3e-25	515 - 574	100	60 / 60	plus
Harvest35	U35_21655	577	3e-25	515 - 574	100	60 / 60	plus

Contig Sequence (577 bp)

>U35_21655 577 Hv_44K_v2
GCGCTCTTCCCTCCCCCCCTTCCTCAGTCGGCTCCTCAGCTCGAAAACGCGAGCGCCAAA
ACTCCCCTGCGCCGCCAAACCGGCGGTTGGGGTTCCGCCCCCCCGCTTCCCCCGCCGCCC
CGCGCCCACGCCGCCCACGGTAGCCCCGCCGTCGCCGTGCAGCTCCCCGACGACCCCCAG
CCTCGCCGCCTGCCGTGCGCCCGTGCCGCATCGGCGGACTCCCTGGTTTGGAACGAATTG
TTCCTTTTGTAGAGGTTGTATTACAAGGACCAAATGCCTCTCTTCAAGAGGACACCTTTC
TTCTTACTGGACCCGCCAAAGGACTTGGATCCTAAGGAGAAGGTGTTTCAAGTTCGATTT
ACTAAGGAGATATTTCGGGATTACCAGGAATACCTGAATAGATTGAACCTTTACCGTAAA
AGAGTTTGGACATGTAATGTGTCTGGGAAATCTAATTTAACCTATGAGGAAGCTTTGGTC
TCAGAGCAGCGTGCTGCAGAGAAGGCTCAACAGTTGCCAAGAGAGCTAATGTCTCCTGTT
CTCCAGATGATTCAATACAGTACACTTAACTTAACCG

Homology of Contig U35_21655 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g10777.1	642	2e-57
Arabidopsis v10	None