barSeed - Barley Seed Development Database

Probe CUST_37730_PI390587928

Source Contig U35_21658

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37730_PI390587928	Hv_44K_v2	AAGGAAGCCTGTTGCAGCCCAACATTATAATAAGGGTGATAAAGATGGAGCGAGCATCAG	753	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372804	2163	2e-24	811 - 870	100	60 / 60	plus	ABC09515 ABC13981
MLOC	MLOC_14174.4	915	2e-24	55 - 114	100	60 / 60	minus	None
MLOC	MLOC_14174.1	950	2e-24	90 - 149	100	60 / 60	minus	None
MLOC	MLOC_14174.3	1141	2e-24	177 - 236	100	60 / 60	minus	None
MLOC	MLOC_14174.2	1038	2e-24	178 - 237	100	60 / 60	minus	None
JLOC1	JLOC1_9663.3	988	8e-25	753 - 812	100	60 / 60	plus
JLOC1	JLOC1_9663.2	887	8e-25	745 - 804	100	60 / 60	plus
JLOC1	JLOC1_9663.1	891	8e-25	744 - 803	100	60 / 60	plus
Harvest21	ABC15985	815	3e-25	754 - 813	100	60 / 60	plus
Harvest35	U35_21658	815	3e-25	754 - 813	100	60 / 60	plus

Contig Sequence (815 bp)

>U35_21658 815 Hv_44K_v2
GCCCAAATCCACCGCTTGTCGTCTCCCGTGAGAGTTGCAAGCACTGCGGGGCAGCGGGAG
GCGATCGCGAGGGGCAGTTAGTGGACGGTGGCGGTGCGAGAGCATGGCGGCGACATCGTA
TTCTTCGTCGTCATCGGCGGCCGGGGCTGGCGGCGGCGCCGCGGCGGCGACGGCGGCCGG
GCTGAAGACCTACTTCAAGACGCCCGAGGGGAGGCACAAGCTGCAGTACGAGAAGGCGCA
CTCCGCCACTATCCTTCACTACAACCACGGCGGGAAGACCGTCTCGCAGTTGACGGTGGC
ATACCTGAAGGAGAGGTCGACTGGCCAAGGCTCCACACCATCAACTCCAAGCTCCAGCAG
TGGGATGCGATCGGCGGCAGCAAGGCTGCTAGGCACCGGGAATGGTAGTCGGGCACTTAG
CTTTGTTGGGGGCAATGGTGCCAGTCGTGCTGTGTCTGGAAGCAGCCGTGTGGGAGGAAC
CCTTGGTACATCTACAAGCCTTGGAGGATCTCAAGCTGTAGCAAACTACGATGGCAAGGG
TGCATACATCATCTACAATTCTGCGGATACACTATTCATTAGTGACCTGAATTCCCAGGA
CAAGGATCCGCTAAAGTCCATCCATTTTAGCAACTCTAACCCATTGTGCCACGCATTCGA
CTCGGAGGCCAAGGAGGGGCATGACTTGATCATTGNGATGGGATCAGGGGATGTTTATTC
AATGTCACTGAGGCAACAGCTACAAGAACCTGGAAGGAAGCCTGTTGCAGCCCAACATTA
TAATAAGGGTGATAAAGATGGAGCGAGCATCAGCA

Homology of Contig U35_21658 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g07450.3	503	2e-87	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi4g41400.1	568	9e-89
Arabidopsis v10	None