barSeed - Barley Seed Development Database

Probe CUST_3772_PI390587928

Source Contig U35_14364

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3772_PI390587928	Hv_44K_v2	GCTCCACCAGATATATATGTTCTTGTATTTTTCTATGTTTGGAGTGAGAACATGTCTGTT	1396	GeneList: red MasterList: Thioredoxin_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.268	1.591	1.187	0.814	0.275	0.294
Raw	1524.147	2979.674	1939.640	2106.919	248.219	287.341

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56412.1	733	2e-24	534 - 593	100	60 / 60	plus	ABC32852
JLOC1	JLOC1_36478.1	752	8e-25	565 - 624	100	60 / 60	plus
Harvest21	ABC09940	1441	3e-25	1359 - 1418	100	60 / 60	plus
Harvest35	U35_14364	1503	3e-25	1397 - 1456	100	60 / 60	plus

Contig Sequence (1503 bp)

>U35_14364 1503 Hv_44K_v2
ATTGACCTACGACACGAGCAGACATTTCAATCCCCCCGAAACCCTGAGCCGCCGCCGCCG
CCGCCGCAGCCGTAGCCAAGCCTAGCAGCCATGGAGGGATCCGCCGCGGCGCCGCTCCGC
ACGCGCGTGTGCATCATCGGCAGCGGCCCGGCCGCGCACACGGCGGCCATCTACGCGGCC
CGCGCGGAGCTCAAGCCCGTGCTCTTCGAGGGCTGGATGGCCAACGACATCGCCGCGGGG
GGCCAGCTCACCACCACCACCGACGTCGAGAACTTCCCCGGATTCCCCACCGGCATCATG
GGCATCGACCTCATGGACAACTGCCGCGCCCAGTCCGTCCGCTTCGGCACCAACATCCTC
TCCGAGACCGTCACCGAGGTCGACTTCTCCGCCCGCCCCTTCCGCGTCACCTCCGACTCC
ACCACCGTCCTCGCCGACACCGTCGTCGTCGCCACGGGCGCCGTCGCGCGCCGCCTCCAT
TTCTCCGGTTCCGACACCTACTGGAACCGCGGCATCTCCGCCTGCGCCGTCTGCGACGGC
GCTGCGCCCATCTTCCGGAACAAGCCCATCGCCGTCATCGGCGGCGGTGATTCCGCCATG
GAGGAAGGCAACTTCCTCACCAAGTACGGATCCCAAGTGTACATCATCCACCGGCGCAAC
ACCTTCCGCGCCTCCAAGATTATGCAGGCTAGGGCGCTCTCCAATCCTAAGATCCAGGTT
GTCTGGGACTCGGAGGTCGTCGAGGCTTACGGCGGTGCAGGCGGCGGCCCATTAGCTGGG
GTCAAGGTCAAGAACTTGGTGACTGGTGAGGTGTCTGACCTTCAGGTGTCCGGGCTTTTC
TTCGCCATCGGGCATGAGCCGGCCACCAAGTTTCTCAATGGGCAGCTTGAGCTCCATGCC
GATGGGTATGTGGCCACCAAGCCGGGCTCTACACATACCAGTGTGGAGGGGGTCTTTGCT
GCTGGAGACGTGCAGGATAAGAAGTATCGTCAGGCCATTACTGCTGCTGGATCAGGTTGC
ATGGCTGCTTTGGACGCCGAGCACTATCTGCAGGAGGTGGGTGCACAGGTGGGCAAGTCT
GATTGACTCTTTTCTGGTCAAGCGACGGTCATCAGCTCGCCGAAAGCCGCACTCTGAGCT
TGATGAGGTTGGTTGTCCAATTCTTCAACTGTTTCATTATGCGGCGAGCCGCACTCTGAG
CTTGATGAGGTTGGTTGTCCAATTCTTCAACTGTTTCATTATGCTGCTTTGCAGCACCGC
ATTATTCTCCTGTCATTAGGCCCTAGATGAACTTCCATTGGTGCTGGAAATGATTCATAT
TTATCATTGGTGGAACTCAAACTGATTCTTATGTATCATTGGGGAAATCACATTATTATT
CTGAGATATCTGTATTGCTCCACCAGATATATATGTTCTTGTATTTTTCTATGTTTGGAG
TGAGAACATGTCTGTTTTTTTTGAGAAACCAACATGTCTGGTCTTTAAAAAAAAAAAAAA
AAA

Homology of Contig U35_14364 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48290.1	332	4e-179	protein\|thioredoxin reductase 2, putative, expressed
Brachypodium v1_2	Bradi3g53200.1	332	0.0
Arabidopsis v10	AT2G17420.1	378	1e-151	\| Symbols: NTRA, ATNTRA, NTR2 \| NADPH-dependent thioredoxin reductase A \| chr2:7564357-7566219 FORWARD LENGTH=378