barSeed - Barley Seed Development Database

Probe CUST_37729_PI390587928

Source Contig U35_21659

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37729_PI390587928	Hv_44K_v2	TGATCTCGTCTCAACACAGCTTCCGTCCGACGTTCCAACGACCGATGCTCCCATCTTGGT	601	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.010	1.149	1.701	1.187	0.477	0.286
Raw	23.980	42.963	54.301	60.993	8.145	4.065

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374349	1541	2e-24	708 - 767	100	60 / 60	plus	ABC16426 ABC34609
MLOC	MLOC_65317.2	1514	2e-24	761 - 820	100	60 / 60	minus	ABC16426 ABC34609
MLOC	MLOC_65317.1	1879	2e-24	1126 - 1185	100	60 / 60	minus	ABC16426 ABC34609
JLOC1	JLOC1_42976.1	1558	8e-25	661 - 720	100	60 / 60	plus
Harvest21	ABC16395	659	4e-24	602 - 659	100	58 / 58	plus
Harvest35	U35_21659	661	3e-25	602 - 661	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_21659 661 Hv_44K_v2
GCCCCCGCTCGCCGGCGATGGGGCCACTGGAGGACGACGACCTGCTCCGCCAGATCCTCG
TCCGCCTGCGCCCGCAGCCCTCCTCCCTTCCCCGCGCCTCCGCCGTCTGCAAGCGCTGGC
GCCTCCTCGTCTCCGACCCAGGATTCTCCCGCCGCTTCCGCGTCCACCACCGCCGCAGCC
CTCCTCTCCTCGGCTGCTTCCTCAGAAACGACGCCCTGCCCTTCATCCCCACTCTCGACG
CCCCGGACCGCGTCTCCCCCGCCCGTTTCTCCCTGCAGCCCGGCGACGGCGACGGCGACC
GGTTCATGTCCCTCGGATGCCGCCATGGCCTGGCGCTCGTCTTCAACAAGCACACGGGTC
AGATCCTGGTGTGGGACCCCGTCACCGGCGACCAGCGCCGCCTCGACGTGCCACCGGGGG
TCGCGGTGCACGCGGAGAAGACAACGATCAACGGGGCGGTGCTTCGTGCTCGTGCTCGTG
CCGCCGGAGACGAGGCCCANCGCTTCCAATTCCATGTGGTGTTGGCAGTGGCGGACAACG
ACGACGAGCAGCACCGGCGTGCGCTTGCCTGCGTCTACTCGTCGGAGACCGGCGCATGGG
GTGATCTCGTCTCAACACAGCTTCCGTCCGACGTTCCAACGACCGATGCTCCCATCTTGG
T

Homology of Contig U35_21659 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g02247.1	392	8e-59
Arabidopsis v10	None