barSeed - Barley Seed Development Database

Probe CUST_37723_PI390587928

Source Contig U35_33635

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37723_PI390587928	Hv_44K_v2	GCTGATTGATTGATTCAGCGCAACTTTCAAATTATTCGACGGTCGGTCGTGGCCTTTATC	4	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59910.2	3528	3e-21	50 - 107	98	57 / 58	minus	ABC04654
MLOC	MLOC_59910.1	4777	3e-21	420 - 477	98	57 / 58	minus	ABC04654
JLOC1	JLOC1_39028.3	1432	2e-21	1151 - 1208	98	57 / 58	plus
JLOC1	JLOC1_39028.2	1380	2e-21	1099 - 1156	98	57 / 58	plus
JLOC1	JLOC1_39028.1	1371	2e-21	1090 - 1147	98	57 / 58	plus
Harvest35	U35_33635	712	3e-25	5 - 64	100	60 / 60	minus

Contig Sequence (712 bp)

>U35_33635 712 Hv_44K_v2
TGGCGATAAAGGCCACGACCGACCGTCGAATAATTTGAAAGTTGCGCTGAATCAATCAAT
CAGCGCAGTATCAGGACTGATGCTAATGTTGTTGTAGTACTGTTTTCTCCCATGGAGTGG
AGGGATGCAGACTAGAGACCGCATCATGTTCAGGCCCAGCTCGGCAGATCATGCCGGCGG
TAACATTGGCTTTCCTGATAGGAGGAGGCTCCACACACATGCCTGATGGAATTGTCACCC
AACCATTACATCGGAGGCGTCATTTGAGGGTGATGTCGAATATGACGCCTTCGAGATCTG
TGATGCTTGTTCTTGTCCCGTCCACTTCCTTGACAAGCATTCCGCGTTTTTCAGCTTCCT
TCAGTACCAGTGCATCCATGAGCGGCCGCTGGTGGCAAAACTGCCATATGTCCACTTTGT
AAAAGAGAGCAAGAATCGATGTTACACCTTTTCACCAAGTGTTTCATATTACTTGCCAGC
ACAAAGTAGCTCATCGCTTCATGCACTCATGCTGAAGATGACGGCGTGAGTTCAGTCTAT
CAGCAAAGAGCTTCGGTTAGAGTAAAAACAGACGCCAACATCCAAAGAAACCGGAATGAA
AGATAGTAGGAGTACAAGGGAAACCACCAGCACAGTTGTGATCTTCTTGGGCAGACGATT
CTGTAGGAGCAGTCCCTGATCCCAGCTGAAGTTCGTAGATCTACGGCTTGCT

Homology of Contig U35_33635 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None