barSeed - Barley Seed Development Database

Probe CUST_37715_PI390587928

Source Contig U35_45610

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37715_PI390587928	Hv_44K_v2	ACTTGCTGTTGCTTTTATGGAAACATTAAGTACCGTGCTTCAGGGATTCACTGATGGCCA	343	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354521	2257	2e-24	1251 - 1310	100	60 / 60	plus	ABC14997
MLOC	MLOC_10103.2	1716	2e-24	763 - 822	100	60 / 60	minus	ABC14997
MLOC	MLOC_10103.3	2154	2e-24	845 - 904	100	60 / 60	minus	ABC14997
MLOC	MLOC_10103.4	1927	2e-24	845 - 904	100	60 / 60	minus	ABC14997
MLOC	MLOC_10103.1	2122	2e-24	975 - 1034	100	60 / 60	minus	ABC14997
JLOC1	JLOC1_6588.1	2187	8e-25	1087 - 1146	100	60 / 60	plus
Harvest21	ABC44694	413	3e-25	344 - 403	100	60 / 60	plus
Harvest35	U35_45610	413	3e-25	344 - 403	100	60 / 60	plus

Contig Sequence (413 bp)

>U35_45610 413 Hv_44K_v2
GTTCTGGTGTTGGTGTTTCCTTTGTTGGGTCAAAAGGATTATCTCAAGGTCTTTTAGTTA
CTATAGCTATAGCAGTGCACAACATACCTGAAGGCCTAGCTGTAAGCATGGTACTATCAT
CTAGGGGTGTCTCCCCACAAAAGGCAATGCTATGGAGTATCATAACATCTTTACCACAGC
CAATTGTTGCTGTGCCTGCATTCCTTTGTGCCGATGCATTTCAGAAGGTGCTTCCTTTCT
GTACTGGTTTTGCTGCGGGGTGCATGATATGGATTGTTATTGCAGAGGTTCTTCCTGATG
CTTTTAAGGAAGCCACTCCATCTCAAGTAGCCTCTGCTGGAACACTTGCTGTTGCTTTTA
TGGAAACATTAAGTACCGTGCTTCAGGGATTCACTGATGGCCACGGCTTGGAA

Homology of Contig U35_45610 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g25194.2	578	1e-75	protein\|metal cation transporter, putative, expressed
Brachypodium v1_2	Bradi1g76820.1	572	6e-76
Arabidopsis v10	AT3G08650.2	619	9e-65	ZIP metal ion transporter family \| chr3:2624694-2627308 REVERSE LENGTH=619