barSeed - Barley Seed Development Database

Probe CUST_37712_PI390587928

Source Contig U35_45611

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37712_PI390587928	Hv_44K_v2	TTAATTTAGTGCACAAGTATCCTCTATTGCCTATTCTCAGGTCATATGTGAATGATGCGA	420	GeneList: tan MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.593	0.689	2.206	3.216	1.232	0.912
Raw	21.438	40.121	108.450	254.874	34.725	27.430

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366197	1687	2e-24	775 - 834	100	60 / 60	plus	None
MLOC	MLOC_28822.1	234	2e-24	137 - 196	100	60 / 60	plus	None
JLOC1	JLOC1_19279.1	416	8e-25	336 - 395	100	60 / 60	plus
Harvest21	ABC44697	480	3e-25	421 - 480	100	60 / 60	plus
Harvest21	ABC37847	660	3e-25	365 - 424	100	60 / 60	plus
Harvest35	U35_45611	480	3e-25	421 - 480	100	60 / 60	plus
Harvest35	U35_42275	660	3e-25	365 - 424	100	60 / 60	plus

Contig Sequence (480 bp)

>U35_45611 480 Hv_44K_v2
GTTCTGCCGCGCGCCGCCGGGACAATGGCAAGGCGGATGCTGAATCCAAGGTGTCCTGCC
GCCTGCTCATCGACCTCCTCGACCGGATTCGCGCGCTCGGCGTGAAGCCGTCGCCGGAGG
CGCTAGAGGAGGCCAGGGCTGTCGCGGCGGACTGGAGACGGAGCAAGCGGATCGAGGCGC
AGTCGCTGTTTAAGAATGAGGCGATCGCCTTTCTGCTTCTCATCGGGGTATTTGGTTTGG
TGGAGGATGTTGGTGGCGCCGTCCAGGTGCTCGATCTGGTCGTGTCGATCTCCAGCCGGG
AGCGCGCCGTGGAGATCTTCCTCGGCCTTGGCCTCGACCTCGACAAGCATCTACCAGTTC
TCACTCAGGCGATGATAAGCAAAGGCAAACAGCTCGATGCAGTCAAATTTATCCAAGCTC
TTAATTTAGTGCACAAGTATCCTCTATTGCCTATTCTCAGGTCATATGTGAATGATGCGA

Homology of Contig U35_45611 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g09310.2	306	1e-62	protein\|frigida, putative, expressed
Brachypodium v1_2	Bradi1g71620.1	496	5e-71
Arabidopsis v10	None