barSeed - Barley Seed Development Database

Probe CUST_37707_PI390587928

Source Contig U35_73

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37707_PI390587928	Hv_44K_v2	GTGACTAGCTAATAAACTGTCATATATCACTGCATGTGACAAATAAAAGTGGTCTTGGAA	488	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.013	0.683	5.666	6.892	25.507
Raw	11.903	32.047	2519.793	30928.200	14134.627	54513.533

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56982.1	1216	2e-24	688 - 747	100	60 / 60	plus	ABC00224 ABC33108
JLOC1	JLOC1_36880.1	863	8e-25	610 - 669	100	60 / 60	plus
Harvest21	ABC52903	627	3e-25	462 - 521	100	60 / 60	plus
Harvest21	ABC32446	747	3e-25	121 - 180	100	60 / 60	minus
Harvest21	ABC00224	634	3e-25	489 - 548	100	60 / 60	plus	ABC00224
Harvest21	ABC00021	608	3e-25	483 - 542	100	60 / 60	plus
Harvest35	U35_36938	747	3e-25	121 - 180	100	60 / 60	minus
Harvest35	U35_73	644	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_73 644 Hv_44K_v2
AAAAAAAAAAAACACATTGACAACATGAAGGCCTTCTTCCTCGTGGGTCTGCTTGCTTTG
GTAGCGAGCGCCGCCTTCGCGCAGTACGGAGAAGTTGTTGGCAGTTACGAGGGTGGTGCT
GGTGGGGGTGGTGCTCAACAATGCCCCCTAGGGACAAAGCTAGATTCCTGCAGGAATTAC
CTGCTAGATCGATGCACAACGATGAAGGATTTTCCGGTCACCTGGCGTTGGTGGACATGG
TGGAAGGGAGGTTGTGAAGAGCTCCTTCACGATTGTTGCAGTCAGTTGAGTCAAATGCCA
CCGCAATGCCGCTGCAACATCATCCAGGGATCAATCCAACGTGATCTCGGTGGTTTCTTC
GGATTTCAGCGTGATCGGACAGTCAAAGTGATACAAGCAGCCAAGAACCTGCCCCCCAGG
TGCAACCAGGGCCCTGCCTGCAACATCCCCAGCACTACTGGCTATTACTGGTGATGTAGC
TTCCAGTTGTGACTAGCTAATAAACTGTCATATATCACTGCATGTGACAAATAAAAGTGG
TCTTGGAATAATGTATGGATAAAATTTCTAAAAAAAAAAAAAAAAAGTGTCTATAGCAAA
CATTTCAATATGCCTATGTTGATCATGGTAGCAATATTAACATA

Homology of Contig U35_73 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None