barSeed - Barley Seed Development Database

Probe CUST_37706_PI390587928

Source Contig U35_74

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37706_PI390587928	Hv_44K_v2	CCCGACCTATACTAGTTCAAGCATGAGAATGAAAGACAAAGAAAGTTCTTGTCCAAAAAA	1192	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.025	0.010	0.393	1.768	2.522	2.894
Raw	26.365	7.663	599.035	3800.600	2036.879	2531.413

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_15870.1	598	6e-21	83 - 139	98	56 / 57	minus
Harvest21	ABC00227	1263	3e-25	1193 - 1252	100	60 / 60	plus
Harvest21	ABC00773	891	2e-21	837 - 889	100	53 / 53	plus
Harvest35	U35_74	1263	3e-25	1193 - 1252	100	60 / 60	plus
Harvest35	U35_299	853	2e-21	799 - 851	100	53 / 53	plus

Contig Sequence (1263 bp)

>U35_74 1263 Hv_44K_v2
GCCAAGATCAGAAACATCTATTCCAAGCAAGCAATAGTAACCAAAAATCCAACATGAAGA
CGTTCCTCACCTTTGTCCTCCTTGCCATGGCGATGAGCATCGTCACTACCGCTGGGCAGC
TAAACCCTAGCTACCAAGAGTTGCAATCACCACAACAACCATTTCTGAAACAACAATCAT
ATCTGCAGCAACCATATCCACAACAACCATATCTACCGCAGCAACCATTCCCCACACCCC
AACAATTTTTCCCCTATCTACCACAGCAAACATTTCCCCAATCCCAACAACCAACCCCCC
TACAACCACAACAACCATTCCCCCTGCAACCCCAACCACCACAACAACCTTTTCCTCAGT
CCCAACAACCATTCACCTGGCAACCACAACAACCTTTTTCCCAGCCCCAACAACCAATTC
CCCAGCAACCACAACAACCGTTCCCCTAGCAACCACAACAAATAATTCCCCAACAACCAC
AACAACCATTCTCCCTGCAACCCCAACAACCACATCAACCTTTTCCTCGGCCCCAACAAC
CATTCCCCTGGCAACCACAACAACCATTTTCCCGGCCCCACCAACCAATTCCCCAGGAAC
CACAACAACCATTCCCCCAGCAACCACAACAAATAGTACCCCAGCAACCACAACAACCAT
TCCCCCAGCAACCACAACAACCTTTTCCTCAGCCCCAACAACCATTCCCTTGGCAACCAC
AACAACCATTTCTCCAGCCCCTACAACTATTTCCCTAGCAAGCACAACAACCATTACCCT
TGCAACCACAACTACCATTTCCGCAGCCCCAACAACCAATTGGACAGCAACCACAACAAC
CATTCCTGCGGCAACCACAACAAATAATTCCCCAGCAACCACAACAACCATTCCCCCTGC
AGCCGCAACAACCATTCCCCGAACAACCACAACAAACACTTCCCCAACAACCACAACAAA
TAATTTCCCAGCAACCACAACAACCATTCCCCAGCAACCTCAACAACCATTCCTTCTGCA
GCCACACCAACCTCAGCAACCTTATGCACAACAAGACATCTAGAGTGATTTAGCCCTCTT
GGGCTAATGAAGCAAAAAGTTGTAATACTAGATGGGTGTATCATCGTTTTTTAGTCAATG
AGTGTTCAGTGTAATGATGATAAATAAAGTGATGTGCACCATCATGTGTAATCCCGACCT
ATACTAGTTCAAGCATGAGAATGAAAGACAAAGAAAGTTCTTGTCCAAAAAAAAAAAAAA
AAA

Homology of Contig U35_74 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None