- Probe CUST_37705_PI390587928
- Source Contig U35_45615
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_37705_PI390587928 | Hv_44K_v2 | ATGATAAAATCAGTCGTTTGTGAATAAGCATGCATGTTGGGTACATAGGGGTAGGGGTGG | 44 | GeneList: black MasterList: Pathogenesis_Function_Probe_Module |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.010 | 0.010 | 0.466 | 1.686 | 2.737 | 4.045 |
Raw | 36.451 | 138.131 | 10241.700 | 52655.333 | 31011.467 | 51757.100 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC44707 | 345 | 3e-25 | 45 - 104 | 100 | 60 / 60 | minus | ABC44707 |
Harvest35 | U35_45615 | 345 | 3e-25 | 45 - 104 | 100 | 60 / 60 | minus |
Contig Sequence (345 bp)
>U35_45615 345 Hv_44K_v2 TTGAGCGGGCGGAGCTTACATATGCATACATGCCCACCACACGCCCACCCCTACCCCTAT GTACCCAACATGCATGCTTATTCACAAACGACTGATTTTATCATCACTAAATCCACAGCG GGTGTTCCACGGGGGGGCAATATCAAACGTTGGGAATGGGCCCCAAATTGCACTGCCCCG GGGCGACAAATAATTTGACAAAATCCCGTTGCATTTCCCTGGGGCATCCGGGCAGGGCCA TGAGGGCGCTTTGACCAACATTGCCGGGGCTCGGGTCCACGGGCTGAAACGGGACCGGCA ACCCCATGAAATAACGCAACGCCTCGCACCGGCACTGGTGGGGAA
Homology of Contig U35_45615 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |