barSeed - Barley Seed Development Database

Probe CUST_3769_PI390587928

Source Contig U35_14367

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3769_PI390587928	Hv_44K_v2	TTTCTAATGAATGGAGCCGGGGAGCTCTCCCTGTTAATCTTATTTTTGTTCTCTAGCGGC	1406	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.199	1.741	1.224	0.875	0.347	0.385
Raw	279.445	632.881	385.814	431.038	59.733	72.594

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_14367	1476	3e-25	1407 - 1466	100	60 / 60	plus

Contig Sequence (1476 bp)

>U35_14367 1476 Hv_44K_v2
GGTGCACTTCACCTGAGAACGAACGTGCTAGGGATTTGAGTGGAATACCTTTTTTTTATT
GAAACGGAGGCAAAGATTGCCTCCTCATCATCAAGCTTCCCAAATCTATCAATTAAGCAG
AACAGAATTGCGGAGCGAAAACCGGAACAACCAGATTTGATCATCGCGTTCTAGGAGAGC
AGAGCGGGCTGAGGGATTCGGATCACACAACCACACAACCACCGCGATCTCCAATCAAAT
CCAATGGTGCTGGTCTTGGCGCTGGGCGATCTGCACATCCCGCACCGTGCGCCCGACCTG
CCCGCCAAGTTCAAGTCCATGCTCGTCCCGGGCAAGATCCAGCACATCATCTGCACCGGG
AACCTCTGCATCAAGGAAGTTCACGACTACCTTAAAAGCCTTTGTCCTGATCTCCACATT
ACCAGAGGTGAATATGATGAGGATGCTCGTTACCCAGAGACTAAAACAGTTACTATTGGC
CAGTTCAAGCTAGGGCTATGCCATGGCCATCAGGTTGTTCCATGGGGCGACCTGGACTCC
CTAGCGATGCTTCAGCGGCAGCTGGATGTGGACATCCTCGTCACCGGGCACACCCATCAG
TTCAAGGCCTACAAGCACGAGGGGGGTGTCGTCATCAACCCTGGCTCAGCCACGGGCGCC
CACAGCAGCATCACATATGACGTCAACCCGAGCTTCGTGCTCATGGACATTGATGGCCTC
CGTGTTGTTGTCTACGTGTACGAGCTCATTGACGGCGAGGTGAAGGTTGACAAGATCGAC
TTCAAGAAGACCGCCACGATGCATGGCTGATGGCGCTTTCCACATGACAGAAATCCGATC
CTGTTTGTTCTTATTTTTGCGCCCCCACCTTCCAGAGCTCTTTTGTTTTGTTTCCCGTAC
TAGTTGTACCCTCCTGCTCGATATGGAAAACCAGAGCTGTGTTTACATATTAATGAATGT
GATTACTCAAAAAAAAAAAAAAAAAATGAGTCAAACTCGCTCACAACCTGAAACGGTTTG
TCAAGGAGGCCATCATGTCTCTCTCATGCTCTAATCTCTACGGTGACCGGCGGAATAGCA
GCTGGCGCGGGCGGCATTTTTAATATATGTTAATTTCAGCAGGTCCCTGGATCGATGGAG
AGCCCAGTGTCTGCCCTGGACGCGATTTGTGTGATCTCACCTGGTGCAGCTTGTTGCTAG
AAAAAAAACCTAGTGCCACCAAATCTCTGCTTTGTTGGCGTATTTCCTTATCCATGTACG
TATGATATAATTGTAATAATGATGCTCTGGGCCGGAGCAACTTGGATGGATTCTGTGGCT
TTAGGTAGTCGGTTCCCTTCCCTTTTGTACCAGGACTTTTGAATCTTCGTAACTTTAGGT
CTTTGTGGTCCTGTTTTTCAGGTTTCTTTCTAATGAATGGAGCCGGGGAGCTCTCCCTGT
TAATCTTATTTTTGTTCTCTAGCGGCCGCTCGAGCA

Homology of Contig U35_14367 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g16550.1	189	2e-130	protein\|Ser/Thr protein phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi3g09820.1	189	1e-133
Arabidopsis v10	AT3G47810.2	190	2e-117	\| Symbols: MAG1 \| Calcineurin-like metallo-phosphoesterase superfamily protein \| chr3:17637256-17639017 REVERSE LENGTH=190