barSeed - Barley Seed Development Database

Probe CUST_37688_PI390587928

Source Contig U35_21669

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37688_PI390587928	Hv_44K_v2	CGAGGCACCTGACTGGATAGCATAATACCTATTTTCATGGAATAGAAGGTTTATATAGAT	582	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.111	2.185	1.175	0.793	0.363	0.415
Raw	1642.750	2660.044	1250.705	1372.681	211.281	266.947

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6327.1	2597	2e-24	114 - 173	100	60 / 60	minus	ABC17426
MLOC	MLOC_6327.2	4033	2e-24	85 - 144	100	60 / 60	minus	ABC17426
MLOC	MLOC_6327.3	4039	2e-24	85 - 144	100	60 / 60	minus	ABC17426
JLOC1	JLOC1_4119.1	3982	8e-25	3839 - 3898	100	60 / 60	plus
Harvest21	ABC17426	668	3e-25	27 - 86	100	60 / 60	minus	ABC17426
Harvest35	U35_21669	668	3e-25	583 - 642	100	60 / 60	plus

Contig Sequence (668 bp)

>U35_21669 668 Hv_44K_v2
CTGCGACGAACATCATCATTACCTGAGCTTTTGCAGGTTCTTGTTGATTTTGTTGGGGCA
ATTGATGAGGATTGGTTGTACCAAAGTTCATCAGCAGTAAGCTTTAGTTCGTATCTGGAT
GACATTATTGTATACTTCCAAACGATGCCACAAACGACGTCTGCAGTTGCACTCTGGGTT
GTCAAATTGGATGCCCTCATTGCACCTCATTTGGCACAAGCTGATTCTGGCAGAGGATTA
GGCAAAGGGTCCATAGAGACATGCTTGAGATAGCTAGGAAGGGACTAGATGGATTATTTT
GTGCGGTGCTCCAGCTGCCACTACTCTTTTATTTTTGCATCAGTTCCAATCTTTTGATTG
ATGCCCGCGCTTTTTCTCGAGGCGAGACGAGCATGATGCCCTTTTTTTGCCTTCATCCTG
ATGCCTTCAGCTTTGAGGTTATGATCTTGAACTCTACAGAAGCCACGGCATCTCCGTCGG
ATGGTCGATGGTGTGTGTACAATAATGTAAACACTTAGAAATTCTTTGTTAATAATCATT
GCTCCGGCGTTGTAATTTCCTTTTTGTACTTGAAGTGGTCAGCGAGGCACCTGACTGGAT
AGCATAATACCTATTTTCATGGAATAGAAGGTTTATATAGATCTTTTTGCCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_21669 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None