barSeed - Barley Seed Development Database

Probe CUST_37687_PI390587928

Source Contig U35_33640

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37687_PI390587928	Hv_44K_v2	AGTTTGTGTTCAGGCTCTGCAGTATGAAGAGGTGAAGTTCAAGGCATTCGATTTGGCTTC	398	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2934.2	1310	7e-23	235 - 294	98	59 / 60	minus	ABC06668
MLOC	MLOC_2934.1	1195	7e-23	262 - 321	98	59 / 60	minus	ABC06668
JLOC1	JLOC1_1750.1	1286	4e-23	904 - 963	98	59 / 60	plus
Harvest21	ABC06669	1028	3e-25	741 - 800	100	60 / 60	plus
Harvest21	ABC06668	1067	6e-22	753 - 809	98	56 / 57	plus	ABC06668
Harvest35	U35_33640	672	3e-25	399 - 458	100	60 / 60	plus
Harvest35	U35_1973	1076	1e-23	741 - 800	98	59 / 60	plus

Contig Sequence (672 bp)

>U35_33640 672 Hv_44K_v2
TCATGTATTGTGCATTAACAAATGAACACATATCCTGTTAGAATCAATTACAACATCTGG
ATCCGTAGTTCAACATCAGCATCCGCTAGACTGCTACTGGTCAGATCTTATTCACACTCA
CATGTTAATAAATACATCAAAGCCATTAATTAAATTAGTGCAAGAGTTAGCTTCTAGCAC
TGGTATAGACTGGTGCTATTTGGTATTTTTTATACCAGCCTCTTTGCAACCAACCGGATG
CCAGCATTTTGCTGATAGTCATATATCTCCAGTGAGAAGAACGCATCCAGCCTGTTCCCC
CGAACAAACAGGGAGTCCAATTCCGCAGCGGCCGCTGGGAAGGATGATGAGCTTCTCCAG
ACTGACACTAAGGCGATTCCTAGGGCTGATGTGGCCGAAGTTTGTGTTCAGGCTCTGCAG
TATGAAGAGGTGAAGTTCAAGGCATTCGATTTGGCTTCGAAACCTGAAGGCGAGGGCACC
CCGACTAAAGATTTCAAAGCGCTGTTCTCCCAGGTCACAGCCCGGTTTTGAGTCATCAGT
CCAGGAGTATACTTGCATTTCTAGCTTACAAGGATCTTACTGTATGAGTGTGTAAGCTTT
TGTGTATTATGGAGGTGCTGGCTGGTATAATTGCACAATCGTTTTATCAAATATGCTGAA
AATAAACTCCTG

Homology of Contig U35_33640 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None