barSeed - Barley Seed Development Database

Probe CUST_37677_PI390587928

Source Contig U35_19357

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37677_PI390587928	Hv_44K_v2	TCTCACTAGCCTTGTAATTATGCCACATTGACGGTATTGCTGTTTCAGCGCCACTATAAA	1241	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6818.4	2493	2e-24	2393 - 2452	100	60 / 60	plus	ABC12263
MLOC	MLOC_6818.7	1629	2e-24	1529 - 1588	100	60 / 60	plus	ABC12263
MLOC	MLOC_6818.2	5215	2e-24	2624 - 2683	100	60 / 60	plus	ABC12263 ABC14703
JLOC1	JLOC1_4461.1	3233	8e-25	2599 - 2658	100	60 / 60	plus
Harvest21	ABC12263	1301	3e-25	1 - 60	100	60 / 60	minus	ABC12263
Harvest35	U35_19357	1301	3e-25	1242 - 1301	100	60 / 60	plus

Contig Sequence (1301 bp)

>U35_19357 1301 Hv_44K_v2
GAGCAGATAATCACAGAGAATAAAATCTCCTAAATACAAGACACAAACACTATTTCTACT
AACCATGTTTCACTTCAGTTCGTATACAGCGCACCAAATCCAGGTCAGGCTGCAGCTGCT
TCTGCACCTATTGCCGTTTTTACTGGTGTCACTGCAATCTCGTTTGCCGCTTTCCCTCTC
AGCAAGACATTTTCCATTGCCGTTCTGCAAGCATTAGTATGTGGGGCAATAGGAGCGGTC
TTTGTTAGCAGGGCAATCAAAAAACAGCTTGGTGACCTACTGTCTTCAGAAGCAGAAAAG
ATAGCAATAGCTGACAATACAGATGTTCAGCAAGGTGGATTTGACGTCGCTGGCCCTAGA
GGAGCTCAATTGCAGATTGTGTACGGCGTATTTGGCTACATGCAGGTCCTGTCAGCATGC
TTCATGTCATTCGCTCATGGAGGCAATGATGTCTCCAATGCCATAGGGCCTCTGGCCGCA
GCTTTGTCTCTTCTTCAAGGCGTAGCAAGCAGCGCTGAGATAGTCATACCGACTGAAGTC
CTTGCTTGGGGTGGTTTTGGAATTGTCGCAGGGCTTGCAATGTGGGGTTATAGAGTCATA
GCAACAATTGGCAAGAAAATCACCGAACTAACACCCACAAGGGGGTTCGCAGCAGAGTTT
GCGGCCGCTTCTGTGGTATTGTTTGCATCTAAGCTTGGGCTGCCAATATCTGCTACACAT
ACACTTGTTGGTGCAGTGATGGGTGTGGGATTTGCAAGAGGTCTCAACAGAGTCAGAGCA
GAGACTGTGCGTGAAATTGTGGTCTCTTGGGTGGTCACAATTCCAGTTGGTGCTTTGCTA
TCAGTCGTCTATACATTAATCTTGACCAAGATTCTGAAATACTTTATGTGAGTGCTTTGT
GAGATACAATCTCTGTTTTGAGAGGTCCAGCCATTGTCCCTAAAAAATTTATGCTGTAAA
AAAAAGTGTAACAGTGAATAGATGAGTCAGCTCAAGGAGTTTCCAACAGAGAAATTGAAA
AGATTTGTCAGAGCAAATAATCATTTTCCTGGCAACAAAACACAGATTAGGATAAAGGGT
TTACGGTAAACAATCATGTTTGAGACTCCCAGCTTCTTCATCTTTTATCTCTAATATGCC
ACCTATATGATTATATCTTTATGTTTTCTACCGGAAGGTGGAATATTGCAACTTCTTGTA
GAGATATGATTACTTTATCATACATAATAGACACTGGTTCGTCTCACTAGCCTTGTAATT
ATGCCACATTGACGGTATTGCTGTTTCAGCGCCACTATAAA

Homology of Contig U35_19357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g38020.1	573	9e-149	protein\|inorganic phosphate transporter 2-1, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g47550.1	570	9e-156
Arabidopsis v10	AT3G26570.1	613	9e-117	\| Symbols: PHT2;1, ORF02 \| phosphate transporter 2;1 \| chr3:9756261-9758413 FORWARD LENGTH=613