barSeed - Barley Seed Development Database

Probe CUST_37675_PI390587928

Source Contig U35_19358

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37675_PI390587928	Hv_44K_v2	CATGCTTAGCTACCTTCTGATTTCTGAAAATAAATCTGTACATGTCACTGATTTGTCACT	755	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.942	3.467	0.913	0.851	0.394	0.351
Raw	101.604	94.980	22.836	33.523	2.814	3.422

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368404	1153	2e-24	1065 - 1124	100	60 / 60	plus	ABC11597
MLOC	MLOC_66845.1	702	2e-24	19 - 78	100	60 / 60	minus	ABC11597
JLOC1	JLOC1_44095.2	1360	8e-25	1146 - 1205	100	60 / 60	plus
JLOC1	JLOC1_44095.1	1352	8e-25	1138 - 1197	100	60 / 60	plus
Harvest21	ABC11597	855	3e-25	756 - 815	100	60 / 60	plus	ABC11597
Harvest35	U35_19358	855	3e-25	756 - 815	100	60 / 60	plus

Contig Sequence (855 bp)

>U35_19358 855 Hv_44K_v2
GCCGAGGAGTCGGAGGAGGCGGATGCCGTGCTGATCATCGACGGGGAAGAGGACGAGGAG
GAGGAGTTCGGCGACGACGATCTGTCCGGGTTCCGGGGTCTCGTTCTTGATCTCTCCTAC
AGGCCTGTCAATGTCGTCTGCTGGAAGCGCGCGATCTGCCTGGAGTTCATGGAGAAGGCC
GATGTTCTGGAGTACTACGATCAGACGGTCTCTTCTCCCAGGGGGTCCTTCTACATCCCC
GCGGTTCTCAGGGTTCCACAGCTGCTGCAAGTTGTAAAGAGGAGGAGAGTCAAGCACTGC
CTTAGCCGGAAAAACATACTCTTCAGGGATGGATTCAGTTGCCAGTATTGCTCTTCTGAA
GATGACCTCACGATTGATCATGTCATCCCGGCCTCGCGTGGCGGCAAATGGGAATGGGAG
AACTTGGTGACTGCATGCTCTAGATGCAACTCCAGGAAGGGTAACAAGACGCTGCTGCAA
GCAAACATGAAGCTACGCAAGATCCCCAAGGGGCCTAAGGAATTCGACATCATCGCGGTG
CCCTTGACGAAATCCGCCTTCAGGACGATCAGGAGGAGGCACGGCCTGCCTGAAGAGTGG
CTGCAGTACCTTGCCGGCTCATCGCCATGACCAAGGGAGGACTCCCTTCAGAGTTCAGAC
CATGACCAGTAGCCATCACCTCGTCTCCATGTATATATATTTACCAGGCTCATCTCCAGC
CAAAAGATTCGTGTCTATCCATCACGAGCTCTGTACATGCTTAGCTACCTTCTGATTTCT
GAAAATAAATCTGTACATGTCACTGATTTGTCACTAAATAAAATAAGATACAGACTTGAA
AAAAAAAAAAAAAAA

Homology of Contig U35_19358 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g07480.1	283	6e-113	protein\|HNH endonuclease domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi1g56137.1	288	2e-125
Arabidopsis v10	AT2G23840.1	284	7e-97	HNH endonuclease \| chr2:10153982-10155600 REVERSE LENGTH=284