barSeed - Barley Seed Development Database

Probe CUST_3766_PI390587928

Source Contig U35_14369

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3766_PI390587928	Hv_44K_v2	ATCAAGGCATGCACATAAATAAAGACAAGGGCGTGACTGGCGTCTCTTTTCCAGTATTTT	2078	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.017	0.132	0.578	1.577	2.177	3.517
Raw	12.978	166.615	610.558	2593.880	1213.470	2147.530

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59994.1	1744	2e-24	26 - 85	100	60 / 60	minus	ABC01350 ABC01351 ABC01353 ABC01356
JLOC1	JLOC1_39089.1	1849	8e-25	1686 - 1745	100	60 / 60	plus
Harvest21	ABC01354	2157	3e-25	2079 - 2138	100	60 / 60	plus
Harvest21	ABC01353	864	3e-25	724 - 783	100	60 / 60	plus	ABC01353
Harvest21	ABC01349	496	3e-25	413 - 472	100	60 / 60	plus
Harvest21	ABC36753	445	5e-23	27 - 82	100	56 / 56	minus
Harvest21	ABC01351	457	6e-22	19 - 78	97	58 / 60	minus	ABC01351
Harvest35	U35_14369	2158	3e-25	2079 - 2138	100	60 / 60	plus
Harvest35	U35_14368	673	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (2158 bp)

>U35_14369 2158 Hv_44K_v2
AGAGAGAGTCACACACACTGAGCGAGCTAAACCATGGCGACCCGAGCCAAAGCAACCATC
CCTCTCCTCTTTCTCCTCGGCACCAGCCTTCTCTTCGCCGCGGCTGTTTCCGCCTCCCAT
GACGACGAGGATGACAGGCGCGGCGGGCACTCGCTGCAGCAGTGCGTGCAGCGATGCCGG
CAGGAGCGGCCGCGGTACTCGCATGCCCGGTGCGTGCAGGAGTGCAGGGACGACCAGCAG
CAGCACGGAAGGCACGAGCAGGAGGAGGAGCAGGGCCGTGGCCGTGGCTGGCACGGCGAG
GGAGAGCGTGAGGAGGAGCACGGCCGTGGCCGTGGCCGGCATGGCGAGGGAGAGCGTGAG
GAGGAGCATGGCCGTGGCCGTGGCCGGCACGGCGAGGGAGAGCGTGAAGAGGAGCGTGGC
CGTGGCCATGGCCGGCATGGCGAGGGAGAGCGCGAGGAGGAGCGTGGCCGTGGCCGTGGA
CGGCACGGCGAGGGAGAGCGTGAGGAGGAAGAGGGCCGTGGCCGAGGCCGGCGCGGCGAG
GGAGAGCGTGATGAGGAGCAAGGGGACAGCCGCCGGCCGTACGTGTTCGGCCCGCGGAGC
TTCCGTCGCATCATCCAGAGCGACCACGGGTTCGTGAGGGCCCTTCGCCCGTTCGACCAA
GTGTCCAGGCTCCTCCGGGGCATCAGGGACTACCGTGTCGCCATCATGGAGGTGAACCCG
CGCGCGTTCGTCGTGCCGGGATTCACGGACGCGGACGGCGTCGGCTACGTCGCTCAAGGC
GAGGGGGTGCTGACGGTGATCGAGAACGGCGAGAAGCGGTCCTACACCGTCAAGGAAGGC
GATGTCATCGTGGCGCCGGCGGGGTCGATCATGCACCTGGCTAACACCGACGGCCGGAGG
AAGCTGGTCATCGCCAAGATCCTCCACACCATCTCCGTGCCCGGCAAGTTCCAGTTTTTG
TCGGTCAAGCCTCTGCTGGCGAGTTTGAGCAAACGCGTGCTCCGAGCGGCTTTCAAGACC
TCCGATGAGCGGCTTGAGAGGCTGTTCAACCAGCGCCAAGGCCAGGAGAAGACGAGGTCC
GTGTCCATCGTCCGCGCGTCCGAGGAGCAGCTCCGTGAGCTGCGTCGCGAGGCGGCCGAG
GGCGGGCAGGGCCACCGCTGGCCTCTCCCTCCGTTCCGCGGCGACTCCCGCGACACCTTC
AACCTTCTGGAGCAGCGCCCAAAGATCGCCAACCGCCATGGCCGCCTCTACGAGGCCGAC
GCCCGCAGCTTTCACGCTCTCGCCAACCAGGACGTCCGGGTCGCCGTTGCCAACATCACG
CCGGGTTCTATGACGGCGCCGTACCTGAACACGCAGTCGTTCAAGCTCGCCGTCGTGCTG
GAAGGCGAGGGCGAGGTGCAGATCGTGTGTCCGCACCTTGGCCGCGAAAGCGAGAGCGAG
CGAGAGCACGGAAAGGGCAGGCGGCGCGAGGAAGAGGAGGACGACCAACGGCAGCAACGT
CGTCGCGGGTCCGAGTCCGAGTCGGAGGAGGAGGAGGAGCAGCAGAGGTACGAGACGGTC
CGTGCGCGGGTGTCGCGCGGCTCGGCGTTCGTGGTGCCGCCCGGCCATCCGGTGGTGGAG
ATCTCGTCGTCCCAAGGCAGCAGCAACCTCCAGGTGGTGTGCTTCGAGATCAACGCCGAG
AGGAACGAGAGGGTATGGCTCGCCGGGAGGAACAACGTGATCGGCAAGCTCGGCAGCCCC
GCCCAGGAGCTCACGTTCGGCAGGCCGGCGAGGGAGGTGCAAGAGGTGTTCCGCGCACAG
GATCAGGACGAGGGCTTCGTCGCCGGACCCGAGCAGCAGAGCCGAGAGCAGGAGCAGGAG
CAGGAGCGGCACCGCCGCCGTGGTGACCGCGGGCGCGGCGACGAAGCCGTGGAGACGTTC
CTGAGGATGGCAACCGGTGCGATCTGAAATGCCACCACTGTCAGTGAGCCCGTGCCGGTT
TAAGAGCTGGACTTGTGTGTGTAATACGCGGGAGTAGAATAAATAAGTGTGGCACGGGCT
CAGTACGAATGATGTAAGCTGCCTACCGACCTACTACTATCAAGGCATGCACATAAATAA
AGACAAGGGCGTGACTGGCGTCTCTTTTCCAGTATTTTAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14369 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46100.1	563	5e-132	protein\|cupin domain containing protein, expressed
Brachypodium v1_2	Bradi1g13040.1	581	6e-117
Arabidopsis v10	None