barSeed - Barley Seed Development Database

Probe CUST_37665_PI390587928

Source Contig U35_85

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37665_PI390587928	Hv_44K_v2	CAGTTGTAATGTCGGAATGGGATCACACCTTCAAATAGAATAAAGTTACTGGTTATGCCT	1311	GeneList: lightyellow MasterList: Sugar_nucleotide_interconverters_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.532	0.586	1.063	1.664	1.225	1.090
Raw	12276.700	20805.480	33841.967	76251.700	21600.633	20540.467

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250129.1	1386	2e-24	1327 - 1386	100	60 / 60	plus	ABC01633 ABC01634 ABC01642
MLOC	MLOC_68046.1	295	2e-24	233 - 292	100	60 / 60	plus	ABC01633
JLOC1	JLOC1_44983.1	381	8e-25	233 - 292	100	60 / 60	plus
Harvest21	ABC01633	1387	3e-25	1312 - 1371	100	60 / 60	plus	ABC01633
Harvest35	U35_85	1391	3e-25	1312 - 1371	100	60 / 60	plus

Contig Sequence (1391 bp)

>U35_85 1391 Hv_44K_v2
GACCGCCTGCCCGTCCGTCACCTGCCTCCCCCGCCTCGCCGCGATGGCCGCCGCCCCGTC
GACGCCGCTGCTCAAGGACGAGCTGGACATCGTCATCCCGACGATCCGCAACCTCGACTT
CCTCGAGATGTGGCGGCCCTTCTTCCAGCCCTACCACCTCATCATCGTGCAGGACGGCGA
CCCGACCAAGGTCATCAAGGTGCCCGAGGGCTTCGACTACGAGCTCTACAACCGCAACGA
CGTCAACCGCATCCTCGGCCCCAAGGCCTCCTGCATCTCCTTCAAGGACTCTGCCTGCCG
CTGCTTCGGATACATGGTCTCCAAGAAGAAGTACATCTACACCATCGACGACGACTGCTT
CGTTGCTAAGGATCCATCAGGAAAGGACATCAATGCACTTGAGCAGCACATTAAGAACCT
TCTGAGCCCTTCAACTCCATTTTTCTTCAATACTCTGTACGACCCATACCGTGAGGGTGC
TGATTTTGTTCGTGGGTACCCCTTCAGCCTTCGTGAGGGTGCCCCAACTGCTGTTTCTCA
TGGGCTCTGGCTTAACATTCCAGACTATGATGCCCCTACCCAGCTTGTCAAGCCTCTTGA
GAGAAATAATAGGTATGTGGATGCTGTTCTTACAATCCCGAAGGGTACCTTGTTTCCCAT
GTGTGGAATGAACCTCGCGTTTGACCGTGAGCTCATTGGTCCTGCAATGTACTTTGGCCT
TATGGGTGATGGCCAGCCTATTGGTCGCTACGATGATATGTGGGCTGGATGGTGCACCAA
GGTGATTACTGATCATTTGAGCCTGGGTATTAAGACTGGTCTGCCCTACATCTGGCACAG
CAAAGCAAGCAACCCGTTTGTGAACTTAAAGAAGGAATACAACGGCATCTTCTGGCAGGA
GGAGCTGATCCCCTTCTTCCAGTCTGTGACCCTCTCAAAGGAGGCCACCACTGTCCAGAA
GTGTTACCTTGAGCTGGCCAAGCAAGTGAAGGCGAAGCTCGGCAAGGTGGATGGCTACTT
CAACAAGCTTGCTGATGCCATGGTCACATGGATCGAGGCCTGGGACGAGCTTAACCCACC
AAAGGGTGCAATCACCACCACAAACAGCCCTGCTGTGAAGAGCAAGTGAGAGGCAGTAGC
ATACATATACAGTTCGCTTGTTCATGTGAGCTACCCATACTGAAATACTCGTGTTTTGGT
TAGTGTTGATGAACTGAGAAATACCATTTCGTTGTAACTTAAAATTTACCTTCTTCCCTG
GACAACCGCCCCGGTGGTTTTAGGGAATTTACATTTTTGCTTGTGTTGGAACAGTTGTAA
TGTCGGAATGGGATCACACCTTCAAATAGAATAAAGTTACTGGTTATGCCTAAAAAAAAA
AAAAAAAAAAA

Homology of Contig U35_85 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g41360.1	367	protein\|alpha-1,4-glucan-protein synthase, putative, expressed
Brachypodium v1_2	Bradi1g21990.1	364
Arabidopsis v10	AT3G02230.1	357	\| Symbols: RGP1, ATRGP1 \| reversibly glycosylated polypeptide 1 \| chr3:415463-417304 FORWARD LENGTH=357