barSeed - Barley Seed Development Database

Probe CUST_37661_PI390587928

Source Contig U35_45628

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37661_PI390587928	Hv_44K_v2	CGTAGACTACATTCAAAATCATTACACGGCTTCTAGAATGGTTATTACTGCCGCCGGTGC	556	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4012.4	1292	2e-24	590 - 649	100	60 / 60	plus	ABC02823 ABC44733
MLOC	MLOC_4012.2	1451	2e-24	533 - 592	100	60 / 60	plus	ABC02823 ABC44733
MLOC	MLOC_4012.3	1918	2e-24	693 - 752	100	60 / 60	plus	ABC02823 ABC44733
MLOC	MLOC_4012.1	1910	2e-24	698 - 757	100	60 / 60	plus	ABC02823 ABC44733
JLOC1	JLOC1_2435.1	1785	8e-25	550 - 609	100	60 / 60	plus
Harvest21	ABC44733	619	3e-25	557 - 616	100	60 / 60	plus	ABC44733
Harvest21	ABC02823	2091	6e-22	897 - 956	97	58 / 60	plus	ABC02823
Harvest35	U35_45628	619	3e-25	557 - 616	100	60 / 60	plus
Harvest35	U35_15129	2115	6e-22	897 - 956	97	58 / 60	plus

Contig Sequence (619 bp)

>U35_45628 619 Hv_44K_v2
TTTNNTTTTTTTNNTTTTTTTAAATAGNAAAAAACTTGTACAGCACAACAAAAGCCGTCT
TTGGTACACTTGTAAATCAAGATGCAAAGGCAAGGACAACTAAACACAATTTTTGTATGA
ACGAAATTGGAAACAAGGCGGGAAAGTCCAAGTAAGGATTTGCTTAAATCCTCAAAGCGT
CAAAAAAATAAAAATACAGACACCACACAGCAATGTTTCCTTCAACATAATCATTTATTA
AAGGTCTATCAGCAACTTCAGAGGTAAGAGAAGAGCTGCAGCAGTTCAAGTTACTCCTTT
TAGTTCCGATGGAGAGAAGACCTGTCCATTCCAGGAACAGCAGGAGAAGCAGCCGAGCTA
CTCCTCGACCTCGACCACCTTCTTGGGCTCGTGGAGGTCCGCCGGGCGGTGGTCCTTGCC
CCATCCGACGCCGCGGGTGGACTCGAGGTACTGGTCGACGAGGTGGCGGCACTTCTGCTG
CATTCCAGTATACTTCTCTTGGCAGGCCAATCTTGGGTTCTGCTGATAACGTCAAGTCTA
TCACCAAAAAGGATCTCGTAGACTACATTCAAAATCATTACACGGCTTCTAGAATGGTTA
TTACTGCCGCCGGTGCTGT

Homology of Contig U35_45628 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None