barSeed - Barley Seed Development Database

Probe CUST_37657_PI390587928

Source Contig U35_89

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37657_PI390587928	Hv_44K_v2	GCGTTCCGAATTGCTAGCTCTTCTCTTTCAGTATTATGAAATTCCCATTAGAATATTCAT	1984	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9730.1	238	2e-24	101 - 160	100	60 / 60	minus	None
MLOC	MLOC_34223.1	778	7e-23	100 - 159	98	59 / 60	minus	None
Harvest35	U35_89	2082	3e-25	1985 - 2044	100	60 / 60	plus

Contig Sequence (2082 bp)

>U35_89 2082 Hv_44K_v2
GGTTCTAGATACTTTTCCATACTTTGTATCTGGCGTACTTCACCTAATTTCCTCCGCAGT
CTTAGGCTTCGGTGGCATTTATCACGCGCTTCTGGGACCCGAGACTCTTGAAGAATCTTT
TCCATTCTTTGGTTATGTCTGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCA
CTTAATTTTGTTAGGTCTAGGTGCTTTTCTTCTAGTACTCAAGGCTCTTTATTTTGGCGG
TGTATATGATACCTGGGCCCCTGGGGGGGGAGATGTAAGAAAAATTACCAATTTGACCCT
TAGTCCCAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGGGGAGAAGGGTGGAT
TGTTAGTGTAGATGATTTAGAAGATATAATTGGTGGACATGTATGGTTGGGTTTTATTTG
TGTATTTGGGGGAATTTGGCATATTTTAACCAAACCCTTCGCATGGGCTCGCCGTGCATT
TGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGCTGCTTTATCTGTCTTTGGTTT
TATCGCTTGTTGTTTTGTATGGTTCAATAATACAGCTTATCCGAGTGAGTTTTATGGACC
CACCGGGCCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGACCAGCGTCT
TGGAGCTAATGTGGGATCCGCTCAAGGACCCACAGGTTTAGGGAAATATCTAATGCGTTC
CCCAACTGGGGAGGTTATCTTTGGAGGGGAAACTATGCGTTTTTGGGACCTTCGTGCTCC
ATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGGTTGAAAAAAGACAT
ACAACCTTGGCAAGAACGGCGCTCAGCAGAATATATGACCCACGCTCCTTTAGGCTCTTT
AAATTCCGTGGGTGGCGTAGCGACCGAGATCAATGCAGTTAATTATGTCTCTCCTAGAAG
TTGGTTATCAACTTCTCATTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTATGGCA
TGCAGGAAGAGCCCGAGCTGCTGCAGCAGGTTTTGAAAAGGGAATCGATCGTGATTTGGA
ACCTGTTCTTTACATGAACCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTTT
TTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTTTATGAAAG
AAAGATAAGGGACAGAATAAAAAAAAATGAAAGAAACAAACGTATTCAATAAGCAAAAGG
AGAGAGAGGGATTCGAACCCTCGATAGTTCCTAGAACTATACCGGTTTTCAAGACCGGAG
CTATCAACCACTCAGCCATCTCTCCACCGCCTAATCCTTATTTTACTCCTACAAATAGAA
CATAGCCATATAAAAAATAAAAATATTTATTAACCTCTAGAAAGATATCAGATACAAGTT
CCTTTTCGATATATCTCTGTATACTGTATACACGGATACAGGATCCGCTATACCCGCTTG
TGAAATAAAGACTAAATAACCTCCTCTCACCCCCATATCCAAATAAAAAAGAGGTTAAGT
AATAAATTTTAATTAAAGAGAAGAATCAATGGATTCATGATTAAACCCCTCCTACTTCTT
GTATTTTTTTACAATTTTGGTTAAGTGAGGGATCAAATATGTAGTCAACTTTATTTGATG
GTAGCTTGGAGGATTAGAAATATGACTATTGCTTTCCAATTAGCTGTTTTTGCATTAATT
GCGACTTCCTCAGTCTTAGTAATTAGTGTACCCCTTGTATTTGCTTCTCCTGATGGTTGG
TCAAATAATAAAAATGTTGTATTTTCCGGTACATCATTATGGATTGGACTAGTCTTTCTC
GTAGCTATTCTGAATTCTCTCATTTCTTAAATTAAATTTGGTTAATATTTAGTAACCCCA
TAAAAAAGAAATAATAAAGGCCATTTAAAAAATTCGAATAGTGAGACGTATTAAAACGCA
ATTTGCGTTCCGAATTGCTAGCTCTTCTCTTTCAGTATTATGAAATTCCCATTAGAATAT
TCATTGACAGATAATAAAAAAAAAAAAAGCTCGAGGGGGGGC

Homology of Contig U35_89 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g16874.1	408	protein\|photosystem II 44 kDa reaction center protein, putative, expressed
Brachypodium v1_2	Bradi1g78082.1	408
Arabidopsis v10	ATCG00280.1	473	\| Symbols: PSBC \| photosystem II reaction center protein C \| chrC:33720-35141 FORWARD LENGTH=473