barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37652_PI390587928Hv_44K_v2ACCAACGTATTTTCAGTGGTAAACCCTTTTACCAAGCGTCTGTAGTCCGAATCGCTGCAA699GeneList: bisque4
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4702.3541.5200.8560.3180.316
Raw 1784.7354432.9702401.4332159.537279.710308.067



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_4531.114192e-2438 - 9710060 / 60minus ABC20407
MLOCMLOC_4531.313852e-241 - 6010060 / 60minus ABC20407
MLOCMLOC_4531.214222e-2438 - 9710060 / 60minus ABC20407
JLOC1JLOC1_2834.217888e-251319 - 137810060 / 60plus
JLOC1JLOC1_2834.117848e-251315 - 137410060 / 60plus
Harvest35U35_216758163e-25700 - 75910060 / 60plus



Contig Sequence (816 bp)

>U35_21675 816 Hv_44K_v2
CCTTCACGACGCCGCCGCCGCCGCCGCAGGCCGCGCACTACGGCCACGGCGCCCACCAGC
AGTACCACGGCGTCCTCCCGTTCTACCCCGCCGCCGCCAACTACGGCTACTCCCCGAACT
ACGTCACCGACCTGAGCTACAACGCGCAGAAGCTGGGCCAAGCGGCAGCGGCGCCTGGCG
CGGGCGGGCCCTACATGCAGCCGCAGGGTCACTTCTCGTACCCGGCGGCGGCGGCGCAGG
GAGGCATGCTGGCGCCCAACGGCATGATGCCCGTGTACCCCTACTATCACTACCACCACT
ACCACGCCTCGCAGGGGCTGGGCGTCCCGGCCGCGCACTACTTCCCGCCGGTCTCCGCCG
CCGTGCCCACCGTGCCCGCCATCATCTCCAAGCCCACAGTCATGCTGCCTCCCAAAGTGG
AGCAGGTGGCCGGGTGCAGCTGAAGGCGCGGTGACAGTGCGAGGAGTTAAAAGGAGGCCG
GAGGTGCTCGCCCGATCTGTCTTTCTGATTATAACAAGCCGCACAAGAAGAAGAAGAAGA
AGAAGCGCTCGTCCACGTACGTCGTCGGGTGGTCTAGCCAGCCTTGCCGCCTATTGCATT
CGTTCAATTCCCTCTAACTCTGTGCGCCCATGGGGTGGGCGCACGGCCCAGCAAAGTCTG
TAACAAAACATTCATTCCGTCTCTCTCTCTCGCTCGTTTACCAACGTATTTTCAGTGGTA
AACCCTTTTACCAAGCGTCTGTAGTCCGAATCGCTGCAAGGGGCAGCGAACCTGAATAAA
ATCGTCGTAATCTTCGGTCAAAAAAAAAAAAAAAAA



Homology of Contig U35_21675 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None