barSeed - Barley Seed Development Database

Probe CUST_37635_PI390587928

Source Contig U35_2134

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37635_PI390587928	Hv_44K_v2	GGGCGGTGAAAGGAATGTCGGATTAATTAATTTTGCTACCACAACATGTTTGCAGGTAAA	466	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354226	2295	3e-21	2239 - 2295	98	56 / 57	plus	ABC05848 ABC05849
JLOC1	JLOC1_24944.2	2493	1e-23	2290 - 2347	100	58 / 58	plus
Harvest21	ABC05848	540	3e-25	15 - 74	100	60 / 60	minus	ABC05848
Harvest21	ABC05849	690	4e-24	73 - 130	100	58 / 58	minus	ABC05849
Harvest35	U35_2134	540	3e-25	467 - 526	100	60 / 60	plus
Harvest35	U35_2135	689	4e-24	560 - 617	100	58 / 58	plus

Contig Sequence (540 bp)

>U35_2134 540 Hv_44K_v2
CGGACCGACACAAGGAGCGAGGAGTTCTACTCCCTGCCGTTCAACCTCAACAAGTTCTTC
CCGTCCGTTTGAGCAAAGCTGTGATTAATGCAAGACACCAAGGGAAATCCTATGCCCTTA
ATCAGGGTCCAAACCCCTATTGGTATAATCGGAGTTTTGGTGTCTCGCTCGAACTATGTT
CCTTATGTTAGGTTACCTCTGTATATTTGATACCCTATTGGGGGCAACGACTAGGAAGTT
TTGCTACTCGTTTGCATATGGGAAGGGTACGTTAGTTCTTAGTTCTTACCTCTAGTAGTT
TATCTCGTTCTGAAACGTGGTCACTCTATTGACTGCCATTGTGGTGCTACTACTTAGCAG
TGAAGCTAGATTCTGTATGTAGGCTTTTATCAGAACAATCAAATGGTGTTCTACCGGTTA
TACCATGTATCAGTGGATTTGTGGTATGACTAGCAGTAATGTTGTTGGGCGGTGAAAGGA
ATGTCGGATTAATTAATTTTGCTACCACAACATGTTTGCAGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2134 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None