barSeed - Barley Seed Development Database

Probe CUST_37634_PI390587928

Source Contig U35_2135

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37634_PI390587928	Hv_44K_v2	AGGAATGTCGGATTAATTAATTTTGCTACCACAACATGTTTGCAGGTATACTTAGGCTTG	569	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.799	1.799	1.806	1.451	0.606	0.764
Raw	44.901	159.665	133.136	166.456	24.238	34.069

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24944.2	2493	8e-25	2300 - 2359	100	60 / 60	plus
Harvest21	ABC05849	690	3e-25	61 - 120	100	60 / 60	minus	ABC05849
Harvest35	U35_2135	689	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (689 bp)

>U35_2135 689 Hv_44K_v2
GATAAGTTCCGGTCGTACCGGACCGACCAAGGAGCGAGGAGTTCTACTCCCTGCCGTTCA
ACCTCAACAAGTTCTTCCCGTCCGTTTGAGCAAAGCTGTGATTAATGCAAGACACCAAGG
TTACCTGTACTATCAGTCTCTTCCCCGAGTTCTCTGAAAATGGCAAGCTGTTGGGCTGAA
CTTGTCTTGGTGCAGGGAAATCCTATGCCCTTAATCAGGGTCCAAACCCCTATTGGTATA
ATCGGAGTTTTGGTGTCTCGCTCGAACTATGTTCCTTATGTTAGGTTACCTCTGTATATT
TGATACCCTATTGGGGGCAACGACTAGGAAGTTTTGCTACTCGTTTGCATATGGGAAGGG
TACGTTAGTTCTTAGTTCTTACCTCTAGTAGTTTATCTCGTTCTGAAACGTGGTCACTCT
ATTGACTGCCATTGTGGTGCTACTACTTAGCAGTGAAGCTAGATTCTGTATGTAGGCTTT
TATCAGAACAATCAAATGGTGTTCTACCGGTTATACCATGTATCAGTGGATTTGTGGTAT
GACTAGCAGTAATGTTGTTGGGCGGTGAAAGGAATGTCGGATTAATTAATTTTGCTACCA
CAACATGTTTGCAGGTATACTTAGGCTTGAAATATTTGCAAAGATATATGAAGTTCTGAT
TTTTCTTCTGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_2135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None