barSeed - Barley Seed Development Database

Probe CUST_37633_PI390587928

Source Contig U35_2136

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37633_PI390587928	Hv_44K_v2	TCTGTATACGGCAATGTATCTATCTAAATCTAAATAACAAACAAGCCGAGCTCCATTATC	1052	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55616.1	2499	2e-24	2405 - 2464	100	60 / 60	plus	ABC05411
JLOC1	JLOC1_35901.2	1251	8e-25	1043 - 1102	100	60 / 60	plus
JLOC1	JLOC1_35901.1	1275	8e-25	1067 - 1126	100	60 / 60	plus
Harvest21	ABC05411	1204	3e-25	105 - 164	100	60 / 60	minus	ABC05411
Harvest21	ABC05412	1126	2e-22	1053 - 1110	98	57 / 58	plus
Harvest35	U35_2136	1213	3e-25	1053 - 1112	100	60 / 60	plus

Contig Sequence (1213 bp)

>U35_2136 1213 Hv_44K_v2
GGAGACTGACCAGACAAACGTTGGCTCGCACCAACTCCGCTGAAGCCTGAGAGGAAGGGG
AGAGATCACCCGGCGGCGGCGAGGGGAGGGGAGATGGCCGGAGGCGAGGAAGGGTGGAGG
AGGAGCGGAATCGAGGTCAGCACCCTGCAGTTCGGCTACGACGGGGAGGCGCCCCTCTTC
GCGCGCTTCAACCTCCGCGTCGCCCCCGGCTCCCGCTGCCTCCTCGTCGGCGCCAACGGA
TCCGGCAAGACCACTCTCTTGAAGATTCTTGCAGGAAAACATATGGTTGGAGGGAAGGAT
GTTGTTCGTGTTCTTAATGGTTCTGCTTTTCATGACACACAGTTCGTGTGCAGTGGTGAC
CTTTCCTACTTGGGTGGTTCGTGGAGTCGGACTGTCAGTTCAGTTGGTGATGTTCCACTC
CAAGGCGATTTCTCTGCTGAGCACATGATATTTGGAGTTGATGGGGTTGATCCTGTTAGG
CGAGACAAGCTGATTGATCTACTAGATATTGATCTGCAATGGCGCATGCATAAAGTTTCT
GACGGACAACGCCGCAGGGTACAAATTTGCATGGGTCTTCTTCATCCGTACAAGGTCCTC
TTACTCGATGAGATCACGGTTGATCTCGATGTCGTGACCAGGATGGATCTCCTCGACTTC
TTCAAGGAAGAGTGCGAGCAGAGAGAAGCCACGATCGTCTACGCCACCCACATATTCGAC
GGGCTGGAGACATGGGCGACCGACATCGCGTACATCCAAGAGGGTGAGCTGAAAAGGTCA
GCGAAATACTCGGACATCGAAGAGCTCAAGACGGCCAAGAACCTGCTGTCGGTCGTGGAG
TCATGGCTGAAGTCCGAGACCAAGCTCCCGAAGAAAGAGCCCGCGCTCGTCGAGACCCAG
CCCAGGCGCCCCTCCCCGTTCGACGCCTCCCCTTTCCGGGCGTCGCGCCACATGGCCTAC
TACCGATGATGATCGTGTAAAACCTCTATATTCCGGTCTTGTCATACAACTCTGGAATCT
GTATCTTCTTCTTCTTCTTTCTGTTCCTCGTCTCTGTATACGGCAATGTATCTATCTAAA
TCTAAATAACAAACAAGCCGAGCTCCATTATCCTATAAAAAAAAAAAAAAAAACGCTCAA
TTTTTTTCACTGTACCACATTCTGATGATTATCATCTAAATACAGATCAAACACTCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_2136 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g56550.1	293	1e-177	protein\|ABC transporter, ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi3g54870.1	295	0.0
Arabidopsis v10	AT1G03905.1	290	8e-148	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:993478-995594 FORWARD LENGTH=290