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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37631_PI390587928Hv_44K_v2TGTAAACTGGCTACACCAATTTGTTTGCTGCACAGAAGTTAACAAGTTGAAGGTTTTATT2223GeneList: red
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4371.7711.1730.8000.3120.360
Raw 6929.30713618.8137759.0878481.4631131.2021417.923



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36350745583e-224503 - 455810056 / 56plus ABC05801
JLOC1JLOC1_15070.527958e-252663 - 272210060 / 60plus
JLOC1JLOC1_15070.425558e-252423 - 248210060 / 60plus
JLOC1JLOC1_15070.325498e-252417 - 247610060 / 60plus
JLOC1JLOC1_15070.225808e-252448 - 250710060 / 60plus
JLOC1JLOC1_15070.125868e-252454 - 251310060 / 60plus
Harvest21ABC0580123063e-252224 - 228310060 / 60plusABC05801
Harvest35U35_213823103e-252224 - 228310060 / 60plus



Contig Sequence (2310 bp)

>U35_2138 2310 Hv_44K_v2
GAGGAAAATGACAAGTCTGATGAAGGCCCTGCTTCTGCACCTGCCGAAAGTAACGACTCA
ACTGATGAAATTCTTTTCAATCCAAATGTATTTACGGAGTACAAGCTTGCTGGCAGTCCT
GAGGAGATTGAAGCAGATGAAGCTTTGGTTAAAAAGGTTGGTTCGTATCTGCTAGATACG
GTGATCCCAAAGTTTGTTCAGGATCTTTGCTCTCTTGATGTCTCTCCTATGGATGGTCAA
ACATTAACTGATGTGCTGCATAGCAATGGAATAAACGTTAGGTATCTGGGCAAAGTTGCA
GGCATGATCAAGGATTTGCCACATTTGTGGGACTTATTTTCGGCTGAGATAATTGTTAGG
TCTGCAAAGCATGTTGTCAAGGACATACTGAGGCAAAGCCCGGACCATAATATTGCACCT
GCTGTTGCTCATTTCTTGAATTGTTTTTTTGGCAAAGTTTTGGCTGTTGCAACAAAAGGT
ACTGGCAGTCCGCAGTCGAAAACCCAGAAGGGCCAGAAATCAAGTCAATCAGCTTCTTCA
AAAAAGGGTCAATCTGCATATTCCCAGCTAACATCTGACGGAGTTTGGTCTGACATTAAG
GAGTTCGCGAAACATAAATACCAGTTTGAAGCGCCAGATGATGCGAGGGCTGGGGCTAAA
AGAGTTGCTGTTCTCCGCAATCTTTGCCAGAAGGTGGGAATAACAATTGCCGCTCGCAAA
TACGATCTGCATTCTACTGCTCCATTCCAATCTTCAGATATCTTGAATCTCCAACCAGTT
GTTAAGCACTCAGTTCCTACCTGTACTGATGCAAGGAAGCTTATGGAAGCTGGGAAAATC
CGGATGGCTGAGGGAACTCTAAATGAGGCGTATGGACTATTTTCTGAAGCTTTTTCTCTA
CTTCAACAGATCAATGGTCCCATGCACAAGGATGCTGCAAACTGTTGCCGGTACCTTGCT
ATGGTTTTGTACCATGCTGGCGACACAGCAGGAGCAATTGTGCAGCAACATAGAGAGCTT
ATCATAAATGAGCGATGCCTTGGTCTAGACCATCCTGATACAGCCCACAGCTACGGTAAC
ATGGCTTTGTTCTATCATGGGCTCAATCAAACCGAACTTGCACTGCGACACATGTCCCGT
ACACTGTTGTTGCTGAGTTTAGCATCTGGTCCTGATCATCCGGATGTTGCAGCAACTCTT
ATAAACGTGGCGATGATGTACCAGGATGCGAGCAATATGAGTACTGCTCTTAGGTATCTT
CAAGAAGCACTTAAGAAGAACGAGCGCCTTTTAGGCCCAGGTCATATTCAAACAGCAGTT
TGCTATCATGCTCTCGCAATTGCATTCAGCTGTATGGGTGCATACAAGCTTTCAGTTCAG
CATGAAACCAAGACACATGATATACTGGTAAAACAGTTAGGGAGTGATGATTCACGAACA
AAAGATTCAGAAAATTGGTTGAATACATTCAAGGAGCGAGAACAGCAGGTTATTGCGCAG
AAGCAAAAAGGCCAGGTAACTGCCCCCTCTGCTAACGCTGTTGAATTCTTGAAGGCTCAT
CCTGGATTGTTCCAAGCAATGAAGGCAGCTGCAATCCAATCTGGTGGTGATGGACCAGCA
AATGTCAACAGAGGAAGAGGAGGGGACGAGCGTGCTGCTAAGGCGGCCGCAGAAGCCCGA
AAAACAGCCGTTGCCAGGGGTGTTAATCTGCGCAACGGGCCTGCTGCGAGCGTTTCTGAC
ATCAATCAAATTCTCAACCTCATCAACTCTGCTGCATCTGCATCTGCTGCCTCTCCTGCC
GCCAATGCTCAGACACCTGAATCTGAAGTGCCGCAGTCCAATGGTACTACCCTGAATGGC
GCAAAGGAGGCTAAGGATGCAAGTCGACTGGCCGCTAAGGCTGACGGTCAAGCCCCAGTA
GGATTAGGTGCGTCATTGGAGCTGAAGAAGCAGAAGTCGAAGCAGAAGGCATAGAAATGA
ATCTGCAATGGCTGTTTTCTCCTTGCAATTTTGAACCTCTAGGGTGATTATTTTTTGGCC
CATAGGGATTGTCACGTCCACATAGTGGCAGAGTAATTTTATTTGTGGTGGGGTGGGGGT
TCGTAGAATGAGTGCAATAAAAATAATAGCAACGAGAATGGGGTGAAGACAAATTCTTCT
GGTGGTACTGCTGATTGATGAGATAAAAGCCTTGCATGGCTCATCCTTTTGAGCCCTAAT
TTCTGTAAACTGGCTACACCAATTTGTTTGCTGCACAGAAGTTAACAAGTTGAAGGTTTT
ATTAAAAAAAAAAAAAAAAAAAAAAAAAAA



Homology of Contig U35_2138 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g48620.214270.0protein|tetratricopeptide repeat, putative, expressed
Brachypodium v1_2Bradi3g53420.113840.0
Arabidopsis v10AT3G52140.414190.0tetratricopeptide repeat (TPR)-containing protein | chr3:19333232-19341295 FORWARD LENGTH=1419