barSeed - Barley Seed Development Database

Probe CUST_37622_PI390587928

Source Contig U35_2147

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37622_PI390587928	Hv_44K_v2	GTAACTATTTGGTTTGGCATTTCTGTGATGCGCTATTTTTTGGGCCTATATATATGTAAC	1529	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368883	1870	2e-24	1804 - 1863	100	60 / 60	plus	ABC06394 ABC06395
MLOC	MLOC_71723.1	1810	2e-24	67 - 126	100	60 / 60	minus	ABC06394
JLOC1	JLOC1_47684.1	1686	8e-25	1450 - 1509	100	60 / 60	plus
Harvest21	ABC06394	1651	3e-25	1530 - 1589	100	60 / 60	plus	ABC06394
Harvest35	U35_2147	1651	3e-25	1530 - 1589	100	60 / 60	plus

Contig Sequence (1651 bp)

>U35_2147 1651 Hv_44K_v2
GCGGCGGAGAACATCGTGTCCGAGAGCGGCGACAAGGCGCCCAACTTCGTCTACAGGGGC
CGCCTGCAGCAGCAGCAGGGGCAGGGCCGCCGCGGCGCGATCGCCGTCAAGAAGTTCGCC
AAGATGGCCTGGCCCGACCCCAAGCAGTTCGCGGAGGAGGCCAGGGGGGTGGGCAGGCTG
CGGCACCGGCGGCTGGCCAACCTCATCGGCTACTGCTGCGACGGGGACGAGCGCCTGCTC
GTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACGTCTTCCACTGGGAAAACCAG
ACTCTTGAATGGGCTATGCGTCTAAGAGTTGCGTACCACATTGCTGAAGCGCTGGACTAC
TGCAGCAACGAGGGTAGACCTCTATATCATGACCTAAATGCATATAGGGTCCTTTTTGAT
GAGAATGGTGATCCTCGTCTTTCATGCTTTGGTTTGATGAAAAACAGCAGAGATGGGAAA
AGTTATAGCACAAACCTTGCATATACACCTCCAGAATATTTGAGAAATGGAAGAGTCACT
CCGGAAAGTGTCATATTCAGCTTTGGTACCGTACTACTGGACCTTCTAAGTGGAAAACGC
ATACCTCCTTCCCATGCTCTTGATATGATGCGAGGCAATAATATCCAAGTGTTGATGGAT
TCACATTTGGAAGGAAACTACTCAACAGAGGAGGCAACTGCTTTGGTAGATCTTGCCTCC
CAGTGTTTGCAGTATGAACCTAGGGACCGCCCCAATACAAAAAAGCTGGTTACCATACTT
GAGCCCTTGCAAACAAAATTAGAGGTACCTTCCTACGAGATGCTTGGCATTCCGAAGCTC
GAGGAAGAAGTACCTCCTCCACCTCCTGCTCCGCAACCACCACAACACCCTCTTTCTCCC
ATGGCTGAGGCCTGTTCTAGGATGGACCTGACAGCTATCCAGCAGATTCTTGTATCGACG
CATTACAGAGACGATGAAGGCAGTAATGAGCTATCATTCCAGGAATGGACGCAGCAGATG
AGGGACATGTTGGACGCCAGGAAACGCGGGGATCTAGCTTTCCGTGACAAAGATTTCAAG
ACAGCCATAGAATGCTATACACAGTTTGTTGATGTGGGCACAATGGTGTCGCCGACGGTG
TATGCCAGAAGGAGCTTGTGCCACCTCATGTGCGACCAACCCGATGCTGCCCTCCGGGAC
GCGATGCAAGCGCAATGCGTGTACCCAGACTGGCCAACTGCATTCTATATGCAAGCCGTC
GCGCTGTCGAAACTGAATATGCAGAGCGATGCCAAGGACATGTTGAGTGAGGCTTCGCAG
CTAGAAGAGAAGAAGCAGAAAAACTCGAGATGATCTTGAGGGTGAGTTCTTGTAAAAATG
TGTTGGTTCAGTCTCTTTCGCGGCTCAAATGTTTACGTTGATTGAGACGTGCTATTCCGT
CATTTGGAACAAAACTGTGAGATATCCGAGGTTGAGTTAGGGAGAAAATGTGGGGAAGAA
GTGATGTAGACTTGTAGAGATGTGTGGTTGTAACTATTTGGTTTGGCATTTCTGTGATGC
GCTATTTTTTGGGCCTATATATATGTAACATTTTTTAAAGTTAATCAGGCATATTGCAAG
GGAGTTTACGGTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2147 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g04050.1	532	protein\|protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi1g76227.1	513
Arabidopsis v10	AT4G35230.1	512	\| Symbols: BSK1 \| BR-signaling kinase 1 \| chr4:16755325-16758041 REVERSE LENGTH=512