barSeed - Barley Seed Development Database

Probe CUST_37621_PI390587928

Source Contig U35_2149

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37621_PI390587928	Hv_44K_v2	TAAAATATTGATTTGGATGTACATCGACTCCAGAGTAGATTTCTGCTCATCCTATGGGCT	1919	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54274.1	2074	2e-24	2011 - 2070	100	60 / 60	plus	ABC06394 ABC06395 ABC39948
MLOC	MLOC_54274.2	2132	2e-24	1 - 60	100	60 / 60	minus	ABC06394 ABC06395 ABC39948
JLOC1	JLOC1_34928.1	2090	8e-25	1982 - 2041	100	60 / 60	plus
Harvest35	U35_2149	1979	3e-25	1920 - 1979	100	60 / 60	plus

Contig Sequence (1979 bp)

>U35_2149 1979 Hv_44K_v2
CGCTTCGTTCATGGGTTGCTGCGGCTCCTCGCTGCGGTCGTGGGTCCACGCGGAGAAGCC
GCCCGGCCCGCGGCGGCCTGCTCCCCCTACCCCGCCGCCGCACCGCCCCTCCTTCTCCCT
CAAGGCGCAGAAGGCCGCTCCCCCGGCGGCCGCGGCGCCGGCCGCGCGCGGGGTGGAGGA
GGTCCCGGCGCTCGCGGAGTTCTCGCTGGCGGAGCTCCGCGCGGCCACGGACGGCTTCGC
GGCGGGGAACATCGTGTCGGAGAGCGGCGAGAAGGCCCCCAACCTCGTCTACAGGGGCCG
GCTGCGGGGAGGCGCCGCCCCTCGCGCCATCGCCGTCAAGAAGTTCGCCAAGCATGCCTG
GCCCGACCCCAAGCAGTTCGCGGAGGAGGCGAAGGGGGTGGGCAAGCTGCGGCACCGGAG
GCTGGCAAACCTCATCGGCTACTGCTGCGACGGCGACGAGCGGCTGCTTGTCGCCGAGTT
CATGTCCAACGATACCCTCGCCAAGCACCTGTTCCACTGGGAAAACCAGACTATTGAATG
GGCTATGCGTCTGAGAGTCGCATGCTACATTGCCGAAGCATTGGGATATTGCAGCAATGA
GGAACGCTCTTTATATCATGACCTAAATGCATACAGAGTCCTCTTTGACGAGAATGGTGA
TCCGCGTCTCTCATGCTTTGGTCTGATGAAAAACAGCAGGGATGGGAAAAGTTATAGCAC
AAATCTAGCGTACACACCTCCAGAATATCTGAGAAATGGCAGGGTCACAGCAGAAAGCGT
CATATTCAGTTTTGGCACTGTACTCATCGATCTTCTCAGTGGAAAGCGCATACCTCCTTC
CCATGCACTTGATATGATAAGAAGTAGAAACATCCAAGCACTAATGGATTCACATTTGGA
GGGGAACTACTCAACAGAGGAGGCTACTACTTTGGTGAATCTTGCTTCTCAATGTTTGCA
GTACGAACCAAGAGATCGGCCTGATATAAAAAAGTTGGTTTCCATTCTTGAGCCACTGCA
AACAAAATCAGAGGTGCCATCTTATGTGATGCTTGGAGTTGCGAAACCTGATGAACTATC
AAAGGCACCACCTAGCCCTCCTCCACAGCCACAGCACCCTCTTTCTGCCATGGGAGAAGC
CTGTTCAAGGATGGACCTAACTGCCATACATCAGATTCTAGTCTCGATGCATTACAGAGA
TGATGAAGGGAGTAACGAGTTATCGTTCCAAGAATGGACACAGCAGATGAGGGATATGTT
GGACGCCCGGAAACAGGGCGACTTTGCTTTCCGAGACAAGGACTTTAAAGCAGCCATAGA
CTGTTATACTCAGTTTGTTGATGTCGGGACAATGGTGTCACCAACGGTTTACGCCAGGCG
AAGCTTGTGCCACCTGATGTGTGACCAACCTGACGCTGCCCTCCGGGACGCAATGCAAGC
GCAATGCGTGTATCCCGATTGGCCGACAGCTTTCTACATGCAGGCAGTCGCCCTGTCCAA
GTTAGACATGCAGAGTGACGCCACCGACATGTTGAACGAGGCCTCACAACTTGAAGAGAA
GAGGCAAAAGAGCGCAAGAGGTCCATGAATGAAGAGCATATTAAACTTGGAGAAGTTGCA
TCCCTCCCATATATATGTATGTAATCGTAAGTTTGCGCTGATCTGAGCGGTATATAGGAG
CTAGAAGATCTGCGGGAAGACATTTCACTGAAGAGTCCTGTGAATGCGATTGAAGGAACT
CGTTTGGTTTGGCATGCCTGTGATAGGTAGTGCATTTTTGGGCCCATGTTTGCTGTATAT
AACGTCTGTTGAAACAGGCAGCAAACACGGTCGTTCTTTTGAATGAGTGTTGCTGGTTGT
TGGGAAGGGTCCGTCCTTGTACCTAAAGCTAATAAACATACCTATATCCTGTTTGTACAT
AAAATATTGATTTGGATGTACATCGACTCCAGAGTAGATTTCTGCTCATCCTATGGGCT

Homology of Contig U35_2149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g39670.1	523	protein\|protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi3g32330.1	523
Arabidopsis v10	AT4G35230.1	512	\| Symbols: BSK1 \| BR-signaling kinase 1 \| chr4:16755325-16758041 REVERSE LENGTH=512