barSeed - Barley Seed Development Database

Probe CUST_37620_PI390587928

Source Contig U35_2150

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37620_PI390587928	Hv_44K_v2	CGTGTGAATTAGAGCATGCATAAGTGGAATTTTGAGTTGGTGGAACAAGTGAAAGTAATG	1319	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358046	1039	2e-24	955 - 1014	100	60 / 60	plus	ABC06394 ABC06395
MLOC	MLOC_1910.1	797	2e-24	94 - 153	100	60 / 60	plus	None
MLOC	MLOC_1910.3	950	2e-24	92 - 151	100	60 / 60	plus	None
MLOC	MLOC_1910.4	751	2e-24	92 - 151	100	60 / 60	plus	None
MLOC	MLOC_1910.2	554	2e-24	93 - 152	100	60 / 60	plus	None
JLOC1	JLOC1_1163.1	788	8e-25	640 - 699	100	60 / 60	minus
JLOC1	JLOC1_1162.1	728	8e-25	96 - 155	100	60 / 60	plus
JLOC1	JLOC1_30434.1	249	4e-23	62 - 121	98	59 / 60	minus
JLOC1	JLOC1_50353.1	436	6e-21	115 - 173	97	57 / 59	plus
Harvest35	U35_2150	1423	3e-25	1320 - 1379	100	60 / 60	plus

Contig Sequence (1423 bp)

>U35_2150 1423 Hv_44K_v2
GCACGGGGTTCCTGGGCGACCGGGCCAAGTCCTTCGCCGACAACCTCGCGCGCTACCTCC
CGGGAGGAGCGGGGGACGCGTGCGCTGACCTCGCGCGCCTCTCCGACGAGCTCCTCTACC
TCAAGGTGACCGCCGCCGACGTCGAGCATGCCCGGCGCCGCCTCTCCGACCCCACCCTCG
CCGCCTGGATCCACCGCCTCAGGGACGCGGCCCACGACGCCGACGACCTCCTCGACGACA
GCGAGGCGGGAGGCGGGAGGCGCACGCGGAGGCGGCAGGCTGGGTCAAGCATCGGGGTCT
TCTCCCGATCTATCTGCATCAAGGCGGGTCAACAAACGTATGGGGCGGCAGGCAGCTCTC
CCCCTCGATCTGATCGAGTGAGGTTTGGATAAGGCGGTGACGGACAGGTTGAAGACGCGG
AACGACGGCGACGTCCAGATCTAGGTGAGCACCTACGGGACTTTGCCGCCCAACTTCGTC
TACAGAGGCCGCCTGCAGCAGCAGCAGGGGCAGGGCCGCCGCGGCGCGATCGCCGTCAAG
AAGTTCGCCAAGATGGCCTGGCCCGACCCCAAGCAGTTCGCGGAGGAGGCCAGGGGGGTG
GGCAGGCTGCGGCACCGGCGGCTGGCCAACCTCATCGGCTACTGCTGCGACGGGGACGAG
CGCCTGCTCGTCGCCGAGTTCATGCCCAACGACACCCTCGCCAAGCACGTCTTCCACTAG
AAGATAAAGTTACTGCATGGTACCAAGGACGGGTGTGCACTCCTTTACTGTTGTGTTTTT
CATTTGAGTGTCAACACTAGGTAAGAGGAATGTTTGGTAAATCTAGCCCAATCAGTTTGC
AAAGTCCCAATGCAGTTGCACGAGGTTGAATTTTGCAGGTTTATGGCTGATCGTCATGCT
TTAGCCGAGGAACGGATGGAGTTACCAAGAAAAAAAGGAGGAAGTCCGTCACCTGAACAT
GATCATTGAAGAGATTAATGACAATAATGGAGCTTATATCAACAAGCTCGTTGACAAGAA
AGGAAGCTTCAAGCTGAACTTAGATCAAATGAGTCTTTGAGAGATGAGGTTGTGCATCTA
TGTGCTGAAATCGAGAAGCTCCACGCCGTTAGGAAAGAACTCTCTGCAAAGGTTGCATCA
CTCATGCATGAGCTTAGTAGGGACAAATCACATAGATGACAGGAACTTACATATGCAAGG
TACACACCTCGACACACAGTCTCTTTTGCAGGACCAGACTCTCAAGTATCCCGGTAAATC
TGTTGAATGGAAACTTTGAATATCATTGGTTTGTATAATTCTATTTATTTGCAAGAATGC
GTGTGAATTAGAGCATGCATAAGTGGAATTTTGAGTTGGTGGAACAAGTGAAAGTAATGG
AAAAGAATATGATTTTGATGGGGCAAGGCAAAAAAACTACAAA

Homology of Contig U35_2150 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None