barSeed - Barley Seed Development Database

Probe CUST_37618_PI390587928

Source Contig U35_2152

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37618_PI390587928	Hv_44K_v2	TGTTCTGAAGTTTCAGGAAGAGAAGCAGCTAATTTGCTGCATGTTGAATGGGTTAAAAAA	990	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.046	3.487	1.157	0.779	0.254	0.679
Raw	111.663	211.196	59.945	66.247	6.614	21.155

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68595.2	4116	3e-22	1868 - 1923	100	56 / 56	minus	ABC05394
MLOC	MLOC_68595.3	1892	3e-22	729 - 784	100	56 / 56	minus	ABC05394
JLOC1	JLOC1_45394.1	1418	1e-22	1027 - 1082	100	56 / 56	plus
Harvest21	ABC05394	1061	3e-25	991 - 1050	100	60 / 60	plus	ABC05394
Harvest35	U35_2152	1061	3e-25	991 - 1050	100	60 / 60	plus

Contig Sequence (1061 bp)

>U35_2152 1061 Hv_44K_v2
TCCCCTTCAAAATGCCTCCCACCATCTTCTCCCTCCCTCCTCCCCTCACTTCCATTAGTT
AGTAGAGTAGTATTCAGGTTAATTAGGAGGAAAGAGAGGAGAGGAGGAGAAAACGATGAC
GAGGTCTCTAGAGCCGGCGACCGAGCACAAGGCCTCGTCATCCTTCGGCAACCTCCTCTC
CATCTTCCTCCGGGCCAGCTCCTCCGAGCCCAAGCCGCCGAGGCGGAGCTTCGACGCCGA
GGGCGTCGTCGGGCTCGGCATCGTCGCTGCCATGAGCCGTGCGTGCCTCACCGCCCAGCC
GATCGCAATCGGCGCCGCGGCACGTCGCCGCGCGTGCGAGGTGGACGAGCTCTCCGAAAG
CTACACCTGCGTCATCACGCACGTACCCACCGGCGGCGGCAAGGGCGGCAGCGTGCGGAA
GCGCGTCTACTTTGGGTTCGGCGACGGCGGGAACGGCTGGTTCGTGGAGGCCGGCGAGGA
GGAGCCAGCGAGGGCGGACGACTTCTTGAGCCGGTGCTGCCTCTGCAACAAGAGGCTTGA
TGGGCTCGACATCTACATGTATAGGGGGGAGAAAGCCTTCTGCAGCTCCGAGTGCCGATG
CCACCAGATGCTGATGGACGACCACGCAGAAAAATGTGGACCGGAAGCCCTCAGAGCCAA
CAGCTACTCAGCCTCGCCATGCTCCGCGCCCATGTCCTTCTCCCCCAGCGTCGCGGCGGC
CTAGCCGACCGAGCTGCCTGATGTCGTCAAGCTGCTCCTCGGTTTGTAGTAGCAGAGAAC
ATAGAGATCTAAAAGATCTTTTAAGCGAATTAAAACATAGAGTAATTACTTAAAAAAGGT
TTCTGAACTGTGGCTCAAATAAAAGAGAGGAAGGGAAGTTTTGGGGTCATGTCCGCCGCA
AGATGTTCAGTGCTGTGAGTGTGATTGCATTTCTCTGTACCGAGAAGCGGGGGTGATTGT
CACTCTGCAGAGGAATTTGACGCTGTGCCCTGTTCTGAAGTTTCAGGAAGAGAAGCAGCT
AATTTGCTGCATGTTGAATGGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2152 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07820.1	219	3e-83	protein\|DUF581 domain containing protein, expressed
Brachypodium v1_2	Bradi3g05560.1	196	4e-88
Arabidopsis v10	None