barSeed - Barley Seed Development Database

Probe CUST_37616_PI390587928

Source Contig U35_2154

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37616_PI390587928	Hv_44K_v2	ATATTCAAACTCCCAAGATGAATGTGATAGCTCAGCAGAAGCCATGTAATCTGTTGCAAA	1442	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.355	0.490	2.265	2.675	1.248	0.932
Raw	114.038	244.721	988.571	1814.005	303.243	243.520

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72715.1	1656	6e-24	1543 - 1601	100	59 / 59	plus	ABC05253 ABC43126
JLOC1	JLOC1_48381.2	1774	3e-24	1514 - 1572	100	59 / 59	plus
JLOC1	JLOC1_48381.1	1803	3e-24	1543 - 1601	100	59 / 59	plus
Harvest21	ABC05253	1520	3e-25	1447 - 1506	100	60 / 60	plus	ABC05253
Harvest35	U35_2154	1516	3e-25	1443 - 1502	100	60 / 60	plus

Contig Sequence (1516 bp)

>U35_2154 1516 Hv_44K_v2
CACCGCCGGTATTCCGTTCCCGAATTCCACAGATTTCCGCTCCCCACTCCCAAAGCCCCG
ATACTTTATAGCCGGCGACAGCAAGCCCAGCAAAATACCACCTCCCAACCCGGAAATCCG
CCCACTCCCGCGAATGAATCAGCTTCCCCTTCCCCTTACCCTTCCCTGAGATCCCAGCCC
GAGCCTACGCGCCAGGAATTCCACCGGAATCCTCCCCTCCTAGCCGCAGCGTCGCCGGAT
TGATTCAGGAGGCATTCTTGGTGGCCGGAGAAGTGGTATTTGCTCCTCCGCTTGAGAGAA
TATAACAGAGGCTGTAGTTCAGATCATCATCATCAAACATGTCGCTTCTATCGAAATTAC
GGTTGGTCACTGTGGATGTGACTGGTACTCTGCTTGCTTATAAAGGACGGCTTGGTGATT
ACTACTGTATGGCCGCTAAGTCTGCTGGAAAGCCATGCCCTGACTATGATCGAATGCACG
AAGGCTTCAAGCTTGCATACACTGAGATGGCAAGGAAATACCCATGCTTTGGATTTGCAG
CAAAGATGCCAACCATTGAATGGTGGAGAATTTGTGTCAAGGATTCATTTGTTAAGGCTG
GCTATGACTACGATGCTGAGACATTTGAGAAAGTGTTCAAGAGAATTTATTCTGCCTTTG
GCTCCTCTGCCCCGTACTCAGTGTTTCCTGATGCGCAGCCCTTCATGAGAGAGCTGAGGG
AGAAGGGTATCACAGTTGGGATCGTCAGCAATGCAGAGTACCGTTACAAAGAGGTTATCT
TGCCTGCATTAGGGCTGAATCAGGGCTCGGAGTGGGACTTCGGGGTGTTCTCAGGCATCG
TCGGTGTCGAGAAACCTGACCCAAAAATATACAAGATCGCGCTGGAGATGGCGGGGAACG
TCGCGCCGGAAGAGGCGCTCCACATCGGCGACAGCTACCGCAAGGACTACGTCCCCGCAC
GAAGCATCGGGATGCACGCGCTGCTCCTGGACCGATTCAAGACCGCCGACGCCGAGAGCT
GGAGGAAGTCCGGCGCGCCGGTGCTCCCTGATCTCGAAGCCACAAAGGCATGGCTCGCCA
AGAACCCGACCGAGGAACCCGCTGAGGAGCCACTAGGGGCCGCGCTGCTGCGCAGGATGG
CCGAGAAGCTCTGAACCTCAGCCCCTGGGGTAGTTCCTGTTGTGCTCTTGCTGGGGAGTG
AGGGAGCCAAGGAAAAGGGATGTGTTGTAGTGATGGTTCACTGGCCAGTTTCAGTTTGCT
GGAGCTGCTTGAACTTTGGTAGTAGCTTCCTGTGCTGTTGCTGACTGCTGAATGTGGCAA
GTGATCCAGTTGCGCGACGAACATCTTGCAATGACGAATAATTCTAATCGTGTTTCACAT
AATGGAGAAATAAAAAAAAAAAAAAAAATGTATGAGGTTGGTAGGATCGCGATGTCGGGG
TTATATTCAAACTCCCAAGATGAATGTGATAGCTCAGCAGAAGCCATGTAATCTGTTGCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_2154 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g45440.2	262	1e-156	protein\|haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed
Brachypodium v1_2	Bradi1g31860.2	272	2e-166
Arabidopsis v10	AT5G44730.2	255	7e-126	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr5:18045588-18046519 REVERSE LENGTH=255