barSeed - Barley Seed Development Database

Probe CUST_37614_PI390587928

Source Contig U35_2156

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37614_PI390587928	Hv_44K_v2	TGACTGATGATCTACTCTGTCGATAGCAAATAAATCGTGATGACAGCAAGTTATCTACGC	517	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376206	1073	2e-24	526 - 585	100	60 / 60	plus	ABC05448
MLOC	MLOC_52193.2	532	2e-24	473 - 532	100	60 / 60	plus	ABC05448
JLOC1	JLOC1_33413.1	810	8e-25	629 - 688	100	60 / 60	plus
Harvest21	ABC05448	602	3e-25	518 - 577	100	60 / 60	plus	ABC05448
Harvest35	U35_2156	599	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (599 bp)

>U35_2156 599 Hv_44K_v2
GAGAGAGCCAGGGAAGACACAACAACTCGAGGCAAACACCGTGCCATCTGAAAGTGGTTA
CAAGGGACGAGCAATGGCGTCTGGGGCGGTGAGACCTAAGCTCGCGTACATCGTGTGTTA
CGTCAAGGACGTGCCCAAGTCGGTCGCCTTCTACGCCGACGCCTTCGGCTACAACGTCCG
CCGCGTCGACGACTCGCAGAAGTGGGCGGAGCTGGACACCGGCTCGACGACCATCGCGTT
CACGGCGCTGCACCAGAGGGAGACGGACGCGCTCACTGGCGAGGTGCAGCTGCCCAAGTC
GCCCCGCGAGCGAGGGCCCGTGGAGATCTGCTTCGACTACGACGACGTCGACGCCGCGTA
CCGGCGGGCCGTGGAGAAAGGGGCGGTGCCGGTGAGCGCGCCGGAGCAGAAGAACTGGGG
GCAGAAGGTCGGCTACGTCAGGGATGTTGACGGGATCACCGTGCGCCTTGGGAGCCACGT
CCGCGAGTAGTGGCATACTTGCTCGTGTGTACTGTAATGACTGATGATCTACTCTGTCGA
TAGCAAATAAATCGTGATGACAGCAAGTTATCTACGCAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2156 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16940.1	217	3e-60	protein\|glyoxalase family protein, putative, expressed
Brachypodium v1_2	Bradi1g66460.1	139	2e-69
Arabidopsis v10	AT1G07645.1	137	5e-54	\| Symbols: ATDSI-1VOC, DSI-1VOC \| dessication-induced 1VOC superfamily protein \| chr1:2367612-2368349 REVERSE LENGTH=137