barSeed - Barley Seed Development Database

Probe CUST_37613_PI390587928

Source Contig U35_2157

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37613_PI390587928	Hv_44K_v2	CCTTCTGAAGAGTCAGACATTGTATATTCAAATATGCTGCGGGATTTTATCTTTTGTTAC	2532	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58975.1	6309	2e-24	119 - 178	100	60 / 60	minus	ABC05392 ABC13339 ABC38204
JLOC1	JLOC1_38345.1	2834	8e-25	2631 - 2690	100	60 / 60	plus
Harvest21	ABC05392	2673	3e-25	2528 - 2587	100	60 / 60	plus	ABC05392
Harvest35	U35_2157	2677	3e-25	2533 - 2592	100	60 / 60	plus

Contig Sequence (2677 bp)

>U35_2157 2677 Hv_44K_v2
TCCACCCACGCCGCGTGGGTCACGCCTCCTCGCCCTCCTCCGGCCGCACGTGCCGCCCGA
CCCCCAACCCCCCCTCCCCTCCTCCTTCCCCGTACACCCGGTCCACCGCCAGCCCCCCTC
TCAGATCTCGACCTCCCCGGTGGTGCCGCGCTGCCGTGGCGGTAGCCTCCCTCTCTTAGG
GTTTCGGTCGACGAGGAGGGGCGCCATGGATCAGAGCCGGCGGGCGGTCGAGTCCTACTG
GCGGTCGCGGATGGTGGACGGCGTCACGGCCGAGGACGACAAGGTCGCCCCCGTCTACAA
GCTCGAGGAGATCTGCGAGCTGCTGCGCGCCTCCGACGCCGGCATCGTCAAGGAGGTCGC
CGACTTCGTCCTCAAGCGCCTCGACAACAAGAGCCCCCTCGTCAAGCAGAAGGCTTTGCG
GTTGATTAAATATGCTGTTGGAAAGTCTGGCACTGATTTCAAGCGGGAAATGCAACGGCA
CTCAGCATCTATGCGTCAGCTTGTTCACTACAAAGGACACCCTGACCCCTTAAAAGGGGA
TGCCCTTAATAAGGCTGTCCGTGAAACTGCGAACGAGGCTATTGCTGCTATTTTCTCTAC
TGAGGACCCTAAAGCAGTTGTTGTGACAGAAGGTCTAGGCAAGCGCATACAGGGCTTTGG
AAACACTAATTATGAGCCATCAAGAGATGACAAGAAATCTTTCCTCAGCGAACTAAGTGA
AGTAGTGGGCATTGGTGGTGCTTCTATTAAACAGGGTTTGAGCAACTTTGCTGCCACACA
TTCAATGATGCCAAATGATAATGGCGGTATGTACAAGAGCCCAATTCGCAGGTCTCTGAC
CACAGAAACTGATAGATATGGTAGGTACGATCCAAGTGAAATTCAAGGTGAGAGCCGTGC
TACATCTGGTGCTTCAAAGAATGTGAGTTCTGGTTCTTGGGGTCCAAGTCCCTCAAGTTC
AGCATCAGCCGGTGATACTGACTCAAGTCAACCAGGAATTAAGACTCGTGAGGAGAGACT
TTTGGAAACAATTGTTACTGCAAGCGGTGTGCGGTTGCAACCTACTCGAGATGCTCTGCA
GATATTTCTAACAGAAGCCTCCAAACTGGATGCAGTTGCTTTGAGCCGTGCCCTTGAGAG
TAAACTGAACTCTCCATTGTGGCAGGTTCGCATGAAGGCTATCTGTGTGCTGGAAGCGGT
GGTAAGGAAACAGGATACTGATCCTTATTCCATCATTGCTTCATATTTCAGTGAGAACAG
TGCTTCTGTTGTCAGATGTTGTGAACTGCCACAAGTTTCTCTCAGAGAAAAGGCTTCAAA
AGTATTAAATCTGCTGGTTGGCGAACAACCTACCGGAAGCAAACATCATCCAGAATCAAG
AACTGCAGCAACTACTGTTCAGATGCCTGATTTGATTGATACAGGGGATCAGGATGATCT
AGTAACTCACAGTTCAGCTCAAGAAAGCAGCCAGCAGATAATGGGGAATAGTAATTATGT
TTCTTCAGTTGATGATTTGCTTGGTGGTGAAACTATTGGTAATACCAGTGCCGCTAGCAA
TGGTAATGGAAGTGATCTATTTGCAGATGTATCATTCCATGAGGAAGAGATTAAGGAGAC
TAATGACCTATTCTCAGGCATGACAGTAGAGGAAAAATCCTCAGCCTCTGTGCATGATAA
CTCTCTGATCGAGCAAGATATATTTGGCAGCAGCCCGGAGCCATTGTTCCAAGAAAGGGT
TGATGACAAAGGAACTGTAGATGATTTAATGGCTGGTTTGAACCTTAATGGCACTGCTCA
AGCTCAGCCTGGAGTAAAAGCGGAAACTAACAGTAATCTCAATGGTTCACAGTTCTTTGA
CATGAACAGTCAGACTAGCCATGTGGCAAGTGGTGCAGCACTGAACGGTATCCTTGGTCA
AAGCTCCTTGTATCAACAGGTTCCTTTGCAGTACAACTTGTCACCACAAATGTTTGGTCA
ATCATATCCTGGGCAACAATTAAATTATGGTGCTATGGAAGCTCTTCTTGCTCAGCAGCA
GCAGTTACTACAAAACTTGGGAAATTTCAGTGCTGGACTTGGGCATCCGGCTTTCAATTC
AATGAGTGGCGGAAATGCATCTGGGATGCCAGATATTTTCAATTCAAGTAATCAACCTCC
ACATCAAGTGGCTGTGATGAGCAATTCCAAGAAAGATGAAACTAAAGCTTTTGATTTTGT
CTCGGATCACCTTGCAGCAGCTCGTGGTTCAAAGAAGTAGACCCTAAAAAGAATGTCATG
TTCAGAATTTTGACAAGAACAGAAATGTCAGGCTTCATGGAATTGTCGTACATATCGTCG
ATGATTGACTGATTAGCTGCATGGGTCACACGGCTGGTTTGTTTGGCATGCTTCAGCAAA
TGATTGAAGATTCTCGCACAAGGTTCACAGATGGGGTATTGTGTTGTATTGTGTATTTAG
GAGAAGGCTGGTTTAAGTTAAAAATAAATTGTGAGCTCCATTTTGTTTTCCTTTTTTCTT
TCTATTTCTTGTCCTTCTGAAGAGTCAGACATTGTATATTCAAATATGCTGCGGGATTTT
ATCTTTTGTTACTTTACGGATAAAAAAATAAACTTTTGATGGGAACTGTAAAGTTTGTTA
ATTTTAAAAAGGTCTCATGTTAAAAAAAAAAAAAAAA

Homology of Contig U35_2157 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g13160.1	694	protein\|expressed protein
Brachypodium v1_2	Bradi2g07860.2	690
Arabidopsis v10	AT3G16270.1	690	ENTH/VHS family protein \| chr3:5513701-5516540 FORWARD LENGTH=690