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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37592_PI390587928Hv_44K_v2AGCTGTTGAATGGGCCATGTTTGGTTGTTTTTTCAATGGTGGTCAAGTTTGCAGTGCAAC1001GeneList: skyblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3380.7012.2962.4400.9910.927
Raw 75.090230.679694.5031175.127166.243170.484



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36513219512e-24971 - 103010060 / 60plus ABC07094
MLOCMLOC_66224.210592e-24201 - 26010060 / 60plus ABC07094
MLOCMLOC_66224.122852e-241427 - 148610060 / 60plus ABC07094
JLOC1JLOC1_43621.121268e-251110 - 116910060 / 60plus
Harvest21ABC0709420033e-251002 - 106110060 / 60plusABC07094
Harvest35U35_218020103e-251002 - 106110060 / 60plus



Contig Sequence (2010 bp)

>U35_2180 2010 Hv_44K_v2
GGAGAAAACGTGCTCGCTCCACCCTAAAAGGCAAAAGAAAGCATCGGGAGCCACCGCAGC
AGCACACCACCACTCCTCCCCGCGCCCTCATAATACTCCTGCTACGGCACGGCACCACCA
CCGTCACCACCCAGGCGCCCACCTCGCCGGAGCAGAGTAGCCATGGCCGCGCCCCCAGCG
ATCCCGCGCCGCGGCCTCTTCATCGGCGGCGGGTGGCGCGAGCCCACCCTGGGCCGCCGC
ATCCCCGTCATCAACCCGGCCACCGAGGACACCATCGGCGACATCCCGGCAGCCACCGCG
GAGGACGTCGAGCTCGCCGTCGCGGCCGCGCGGTCCGCGTTCTTGCTCGACGGCGGGAGC
CGCTGGGCGCGCGCTTCCGGGGCCACGCGTGCCAAGTATCTGAACGCGATCGCCGCTAAG
ATTAAAGAAAAGATATCGTATCTGGCATTGCTGGAGACAGTTGATTCTGGAAAGCCCAAG
GATGAAGCAGTTGCTGACATGGACGATGTCGCTGCATGCTTTGAGTACTATGCTGCTCTG
GCTGAAGCCTTAGATGGAAAACAACATGCACCAATCTCTCTGCCCATGGAAGAATTCAAG
ACCTATGTTCTTAAAGAACCCATCGGGGTTGTTGGACTCATCACTCCCTGGAACTATCCT
CTGTTGATGGCTACTTGGAAGGTTGCACCTGCCCTGGCTGCTGGGTGTACAGCTGTGTTA
AAACCATCTGAGCTGGCATCTCTAACTTGCTTAGAGCTCGGCGCAATATGTGAAGAGATA
GGACTGCCTTCAGGAGTTCTGAACATAATTACTGGTCTGGGCCCTGACGCAGGTGCTCCA
ATAGCTTCACATCCCCATGTGGATAAGATCGCTTTTACAGGAAGTACTGCAACTGGTAAG
ACGATAATGACCGCTGCTGCTCAAATGGTTAAGCCTGTTTCATTAGAGCTTGGTGGCAAA
AGTCCTCTTGTTATCTTTGATGATGTTGCTGACATTGACAAAGCTGTTGAATGGGCCATG
TTTGGTTGTTTTTTCAATGGTGGTCAAGTTTGCAGTGCAACTTCTCGCCTACTTCTCCAT
GAGAAAATTGCAGAGCGATTTTTGGATAGACTTGTCGAATGGGCAAAGAATATAAAAATC
TCAGACCCACTAGAAGAAGGTTGCAGGCTGGGTTCAGTCATCAGTAAAGGGCAGTATGAA
AAGATCAAGAAGTTCATCTCAACAGCAAGAAGTGAAGGTGCTACAATTTTGCATGGGGGT
GACCGACCAAAGAATCTCGGAAAAGGGTTCTTCATTGAACCCACTATTATAACAGGCGTT
AGCACATCAATGCAAATTTGGAGAGAGGAAGTCTTTGGACCAGTCATCTGTGTGAAAGTA
TTCAAGACAGAGAGCGAAGCCGTCGAGCTTGCAAATGATACGCACTATGGCTTGGCTGGT
GGTGTGATCTCTGATGATCTAGAGAGGTGTGAGCGTATCGCAAAGGTTATTCACTCTGGA
ATTGTTTGGATAAACTGCTCGCAACCGACTCTGGTTCAAGCTCCGTGGGGAGGGAACAAG
CGGAGTGGTTTCGGCCGGGAGCTAGGAGAATGGGGCCTCGAGAACTACCTGAGCGTGAAA
CAAGTCACCAGGTACTGCAAAGATGAGCTATACGGTTGGTACCAGCGCCCATCCAAGCTG
TAGATGACTTGAGAGTTGAGACGAGGCGTCCATGTCATGAGAATGGAGCCTCGTTCACTG
GAGGACGGGATGAATCCTGATCTTGTGCACGGGGGGAGACTTCTGTACAGCGGTTTCGCA
ATAATGCCATTGTATGTATGGCAAACTTGGTTATGGACTTATGGTAGCGCGTGTCGTCGA
GCCTGTGACAGATGTGGTTGATCAGAACTCAGAAACTTGCTAGAGTAAAAACGACATTAC
GTTCTGCTGCTAAAAAAAAAAAAAAAAATCTGTTTACGTCCTTTTAATGAGAGCTCATCT
GCGAATGTGGTGCAAAAAAAAAAAAAAAAA



Homology of Contig U35_2180 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g39020.15060.0protein|aldehyde dehydrogenase, putative, expressed
Brachypodium v1_2Bradi5g12617.15070.0
Arabidopsis v10AT3G48170.15030.0| Symbols: ALDH10A9 | aldehyde dehydrogenase 10A9 | chr3:17786290-17789918 REVERSE LENGTH=503