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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_37590_PI390587928Hv_44K_v2CTCGTTAGAATTTCTCCATGTACCTTGGATAATCTTGAAATGTGTTTTATCTATGGCATC756GeneList: lightgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1340.2350.3632.0363.2064.817
Raw 5.33215.76522.959207.777108.260178.911



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_10408.19169e-22862 - 91610055 / 55plus ABC05454
JLOC1JLOC1_6814.18691e-23787 - 84410058 / 58plus
Harvest21ABC054548244e-24746 - 80310058 / 58plusABC05454
Harvest35U35_21828353e-25757 - 81610060 / 60plus



Contig Sequence (835 bp)

>U35_2182 835 Hv_44K_v2
ACTTCTCCATCGTGTATCGCCGGCCAGCCCATACGAGCAGCAAGCGAGCTCAGAGAGAGG
TAGAAGAAGACACGGACGCTCGAGGAGAGATGGGCAGCAGGCTCGACGCGCGCACGCTCA
AGGACGAGGTGGCGAGCATGGACCGGCGCCCGCTCCTCGACCTCGGCCACCCGCTCCTCA
ACCGCGTCGCCGACAGCTTCATCCGCGCCGCCGGAGTCGGGGCGGCGAGGGCGGTGTCGC
GGGAGGCATACTTCGTCACCGTCGAAGGGATGGGAGGAGATTCGACGGGGCTGGACACCA
GCGCCAAGAGGAGCAACTTCTCGAGCGCCAGAGGGGATGACGGCCAGAAGTCGCTCGATG
CAGTGGTTAAATCGGCAGGCAAGGAGGCCATCCAGTGGGGATTGGCAGCCGGGGTGTACT
CCGGGATAACGTACGGCCTGAGAGAGGCCAGAGGGCACCATGACTGGAAGAACAGCGCGA
TAGCAGGGGCGATCGCCGGAGCAGCCGTCGCGCTGACAGGGGACAACGGGCACTCCGACC
ACGTCGTCCATTTCGCCATCACCGGAGCCGCACTGTCGAGCGCGGCGACCATGCTCTCAG
GCATATTCTAAGCCATGGAGCGTGGGGCTAGGGCTAAAGAAATTCGGAGCAGCTCTTGAA
ATGTGTAGCGTTCCCCTTGATTTCTCCATGTACCTTCGACACTTTGCGCGCTCTGCCCCA
TCTGCTAGCCATCCCTGCAACTGAGCAAGTCCGAATCTCGTTAGAATTTCTCCATGTACC
TTGGATAATCTTGAAATGTGTTTTATCTATGGCATCAAAAAAAAAAAAAAAAAAA



Homology of Contig U35_2182 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g19770.12647e-77protein|mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
Brachypodium v1_2Bradi2g11567.11753e-85
Arabidopsis v10None