barSeed - Barley Seed Development Database

Probe CUST_37573_PI390587928

Source Contig U35_26866

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37573_PI390587928	Hv_44K_v2	TTTCATCAAGTATGAGTTTGGCATGATTCTGCCGTCATCCAGGATGAGCAAAACAGTCGC	45	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249544.1	3028	7e-23	77 - 137	98	60 / 61	plus	ABC14185
MLOC	MLOC_75786.2	1685	7e-23	1283 - 1343	98	60 / 61	minus	ABC14185
MLOC	MLOC_75786.1	1444	7e-23	1268 - 1328	98	60 / 61	minus	ABC14185
JLOC1	JLOC1_50547.1	1653	4e-23	310 - 370	98	60 / 61	plus
Harvest35	U35_26866	524	3e-25	46 - 105	100	60 / 60	plus

Contig Sequence (524 bp)

>U35_26866 524 Hv_44K_v2
AGATAAAAATCACGAGCTTCGGAAGAACCTGGAGCGTGACATCAATTTCATCAAGTATGA
GTTTGGCATGATTCTGCCGTCATCCAGGATGAGCAAAACAGTCGCCATGGAAGGGGTGAA
GAGGTGCATAAGGAGTGGATCAGGATGGTACGTGAGGTGGCGCACGCCATTGAAGACTGC
ATCGACCGCTTCATGCACCGAGTGAGGATGGCCAAGACAGGGGCCGGGTGGCTCCGACGG
GCTGTCCACCGGGTGAAGACGGTGAAGGCCCGTAACGAGTTCGCCATGGCTATCCAGGAG
CTCAAGAAGATATCAGAGGATGCGTCCAAGCTCAGAGGAGCATACTCCTACTGTGGCAGT
GGGAGCACCACCTCTGACTCTGAGCAGACAGAGACGGCAGCCGCGACCCAGAGGATGAAG
ACGACGACCATTCAGCGGCAGCATCCTGCCCTGTTCCCATGGGTATGGATGTTCCCCGCG
ACGAGATTCTGGATCTGATCCGGCAGCAGCAGCAGCAGCAGCAG

Homology of Contig U35_26866 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None