barSeed - Barley Seed Development Database

Probe CUST_37566_PI390587928

Source Contig U35_38844

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37566_PI390587928	Hv_44K_v2	TGATGTTCAGTTCTTACCCCTGTCGCTTCACTTTGCAGAGTTCTTGCTCTGTTGTGATAA	110	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75262.3	784	7e-23	64 - 123	98	59 / 60	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC49951
JLOC1	JLOC1_50199.1	799	4e-23	81 - 140	98	59 / 60	minus
Harvest35	U35_38844	641	3e-25	111 - 170	100	60 / 60	minus

Contig Sequence (641 bp)

>U35_38844 641 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAGCGATAGCTGAAAACTGAAATTAAGGAATGGAACAGAGAA
ACATCTTTGCAAAGTTCAGAGTCGTTTTCTGCAGAGTTTTACAGAAGGGGTTATCACAAC
AGAGCAAGAACTCTGCAAAGTGAAGCGACAGGGGTAAGAACTGAACATCAAAGACTGAAA
GAAACACCATTACTATTTCACGAGATAATGAAACAGTGTGTTGCGACATAACCAGCACAC
GTTACACAGCGGCAAGAACAGCCTAGCCTAAGCGGAGGTGAACTTGGTGACGGCCTTGGT
GCCCTCGGAGACGGCGTGCTTGGCGAGCTCCCCGGGGAGGACGAGGCGGACGGAGGTCTG
GATCTCCCTGGACGTGATGGTGGGCTTCTTGTTGTAGCGTGCCAGCTTGGCTGACTCGCC
GGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGA
GATGCCGATGTCCGGGTGCACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTACGTCTC
CACGCTCTTCTTGGACTTCTTCTTGCCCTTCTTCTCGCCGCACTCCTTGGACTTTGGCGG
CCGCTTCTCGGCCTTGGGCTTCTTCCCCGCCGTGGTCTTCT

Homology of Contig U35_38844 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05900.1	154	5e-59	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g54520.1	154	7e-59
Arabidopsis v10	AT5G22880.1	145	1e-56	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145