barSeed - Barley Seed Development Database

Probe CUST_37564_PI390587928

Source Contig U35_38847

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37564_PI390587928	Hv_44K_v2	GTACAAGTGGTGGTTTCCAAGGGTTGAATCATGTGCTTCCAAGCTTTTATGATTCTCCTG	54	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51044.1	11237	2e-24	5653 - 5712	100	60 / 60	plus	ABC11862
MLOC	MLOC_51044.4	10699	2e-24	4524 - 4583	100	60 / 60	plus	ABC11862
MLOC	MLOC_51044.3	11664	2e-24	5391 - 5450	100	60 / 60	plus	ABC11862
JLOC1	JLOC1_32572.3	11796	8e-25	5564 - 5623	100	60 / 60	plus
JLOC1	JLOC1_32572.1	11838	8e-25	5606 - 5665	100	60 / 60	plus
Harvest35	U35_38847	679	3e-25	55 - 114	100	60 / 60	minus

Contig Sequence (679 bp)

>U35_38847 679 Hv_44K_v2
CTCGAGGATAAACAGGCTTCCCAAAAATCAAACAGAAGATTATATAATATATTTCAGGAG
AATCATAAAAGCTTGGAAGCACATGATTCAACCCTTGGAAACCACCACTTGTACGGAATC
TCAGAGCGAATGTAGCAGATGATGTAAGGCAAACTCCTAATAGAGTGGTGATCCATCTCA
TACTTGTTGGATGCACAGCTTCATCAAGGAAATATGTGACCAGTCTAGATGAAACAACTT
TATGCCATTGCTCCAGCAACTCTTCAGCGTTTATAGTTACTTGTAGATCAATGAGCATTT
CTAGTAACATGTTCCTCACAATAATATGCTTTCCCATAGCCTCCCGGACAATCTGACGGT
TCGGGGTAAGTTCTGGAGGATCAAATGTCATGATTATGAATCTTACAACAAGCTCCAACT
CGGAAGCTAGAAAACCATCCTCCAAGATGACACCAAGCAGCACAACTAGCTTCTCCAGCA
CAGGAATTTCAACATCCCCACGCTGTAATGTAACAAGAAGATGCTGCACAAGATTAATTC
GACGCAATATTGTGAGGTTGTGGTTCCTANACCAATGCATCGATACCATCCCTCTCAGAC
ACCCAAGAAGAGTTATTTGTACTGATATAGGAGCAGCAACCCATATAGTCCAGTCCAAGA
GAACATGTNCAACCATATC

Homology of Contig U35_38847 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53280.1	3583	6e-137	protein\|WD domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g08917.1	3567	1e-138
Arabidopsis v10	AT1G03060.1	3601	5e-118	\| Symbols: SPI \| Beige/BEACH domain ;WD domain, G-beta repeat protein \| chr1:712971-726891 REVERSE LENGTH=3601