barSeed - Barley Seed Development Database

Probe CUST_37562_PI390587928

Source Contig U35_38849

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37562_PI390587928	Hv_44K_v2	GCACCTATAAGCTCCAGCTAATATATTTGTGTATTACCTCTTGCCTTAATGAAATTCCAA	27	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.534	0.833	1.359	1.862	1.017	0.804
Raw	34.462	85.424	120.095	244.768	47.856	42.354

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17714.1	796	7e-23	157 - 217	98	60 / 61	minus	None
MLOC	MLOC_17714.2	1835	7e-23	42 - 102	98	60 / 61	minus	None
JLOC1	JLOC1_12231.1	1905	4e-23	1729 - 1789	98	60 / 61	plus
Harvest35	U35_38849	727	3e-25	28 - 87	100	60 / 60	minus

Contig Sequence (727 bp)

>U35_38849 727 Hv_44K_v2
CTTTTTTGTAAAATAATATAAGTGTATTTGGAATTTCATTAAGGCAAGAGGTAATACACA
AATATATTAGCTGGAGCTTATAGGTGCTACCAGCTTAAAATATGACACCAATCAGGAGAG
AAAAACTAGCTGTGACTAAACAGGACACACGAATCCTAGTACCCTCTATCATCTTGTACA
TCGCAAGTTTGGACTTGAATCTTGAGCTCAAGCACGACCTCCTAAATCCTAGTATGATCC
AGAGTACGATAGCAATAGACAGGTAAGCAAGGGAAGCCGGCTGTGACATCAAGTGTCAAC
ATAAGGACATGTCAAAGGGATCAGCTTCAGAAAAACCATGGTATTTGAAGCTCTTCTTTG
TATCCCATTTTAGTTCAATATGTGCATCTCGAGAAGCTCTATTCTCCACTTGTAGCCGTT
TACGTTGAAAACGCATCCATTTGCTGTTGCAGCGGTTGACAACTCCAATTTCCATTTCCT
TAAGCACTTTTGCATTCAGAACAAAGAACTGGGCAAAGTGAATAACTTGCCCCCGGTTAC
CATCGTAATTCTTCAATACCACTTTTTTTAAATGGAGTTCTAGGCATTCAATTGGATCCA
GTGGGTCATACTTGGGCACATTATTCATATCCTCCTGTGGGTGCGAAATGACGTACAGCT
TCTCTAAGTAAGGGAAGCACTTGAGCAGGCCNAACATTGCATCTAGATTCGGACCCATAG
AGTCAAC

Homology of Contig U35_38849 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None