- Probe CUST_37554_PI390587928
- Source Contig U35_14897
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37554_PI390587928 | Hv_44K_v2 | GCGTACGGGCGATAAGTTGTTCGTAATATCTGTGTGATTTTGTAACCAAAGTTTTTATAA | 468 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.974 | 0.813 | 0.720 | 0.588 | 1.345 | 1.198 |
| Raw | 2.745 | 2.799 | 2.527 | 3.333 | 2.954 | 3.092 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_13516.1 | 505 | 2e-24 | 302 - 361 | 100 | 60 / 60 | plus | ABC00444 |
| JLOC1 | JLOC1_9164.1 | 487 | 8e-25 | 302 - 361 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00444 | 1058 | 3e-25 | 955 - 1014 | 100 | 60 / 60 | plus | ABC00444 |
| Harvest35 | U35_14897 | 572 | 3e-25 | 469 - 528 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39304 | 642 | 1e-23 | 56 - 115 | 98 | 59 / 60 | minus |
Contig Sequence (572 bp)
>U35_14897 572 Hv_44K_v2 GGACCGATCAAGAAGCACATCATGGAGCACTTCCACCACAAGAAGCCCGTGCCGCCGAAG CCGGAGCCCAAGCCAGAGCCCCACCCTGACTACGGCCCCGTGCCCAAGCCGGAGCCCAAG CCGCAGCCCCACCCGGATTACCACCCCGTCCCTCCCACGCCCACTTACGGCAGTGGCGGC GGCGGCGGCGGCGGTGGATACCACGGACACCACTGAGTCCGATCAACCACCTTCCCGCTC AGCACTGAATCGGCATGGTTTCGTGCTGTCGGTGACTGATTGAGTGACCGCTATTTATGA TTATCGCATCGCATGCATGGTTGGTTTGGTTTTCTTCAGTATCTGCGGACGAGTTCACAA TAAGATCGAGTTATGAGGCGACCAGATGTATCAGTGTGTCAGTCAAGTGTTTTCTTTTTC TCCAAAAAGGGGAGACCCGGCCTCTGCATCATCATGATGCACAGTCAAGCGTACGGGCGA TAAGTTGTTCGTAATATCTGTGTGATTTTGTAACCAAAGTTTTTATAAATCAAGTACTCC GTACATCTTTGTACTAAAAAAAAAAAAAAAAA
Homology of Contig U35_14897 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |