barSeed - Barley Seed Development Database

Probe CUST_37547_PI390587928

Source Contig U35_38850

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37547_PI390587928	Hv_44K_v2	ATGGCAGTGGAAAGATTGTTTTGATCGACAGTGCTGCTGTGAAGTATGCCAGGTTGAATG	539	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3977.2	4363	2e-24	2160 - 2219	100	60 / 60	plus	ABC16509 ABC16521
MLOC	MLOC_3977.1	4582	2e-24	2414 - 2473	100	60 / 60	plus	ABC16509 ABC16521
JLOC1	JLOC1_2408.2	4779	8e-25	2312 - 2371	100	60 / 60	plus
JLOC1	JLOC1_2408.1	4815	8e-25	2348 - 2407	100	60 / 60	plus
Harvest21	ABC34801	636	3e-25	540 - 599	100	60 / 60	plus
Harvest35	U35_38850	636	3e-25	540 - 599	100	60 / 60	plus

Contig Sequence (636 bp)

>U35_38850 636 Hv_44K_v2
GGGCCAATGGGGAGCGTCGAGAGTGGTTAAAACCATAATGTTCAGTGGAGCGATAGGCCA
GATTGATCATGCACATATAGAGAAGGGGGATCCAGAAATTGGCATGTTAGTTGTGAAGAT
TGGTGGTCCAGCATATAGAATTGGTATGGGTGGTGGTGCTGCCTCAAGTATGGTTAGTGG
ACAGAACGACGCAGAGCTTGATTTCAATGCAGTGCAGCGTGGAGATGCTGAGATGTCACA
GAAACTGTATCGTGTTGTCAGGGCATGTGTAGAAATGGGAGAGAAGAACCCAATTATCAG
CATTCATGACCAGGGTGCTGGTGGAAATTGCAATGTTGTGAAAGAAATAATCTATCCTAA
GGGTGCTGAAATTGATATCCGTTCAATTGTCGTTGGTGATCATACATTGTCTGTCTTGGA
GATCTGGGGTGCTGAATACCAGGAACAAGATGCATTGTTGGTGAAGCCTGAGAGCAGAAG
CCTGTTGGAGTCACTTTGTGAGAGAGAAAGAGTTTCAATGGCTGTCCTTGGTGAAATTGA
TGGCAGTGGAAAGATTGTTTTGATCGACAGTGCTGCTGTGAAGTATGCCAGGTTGAATGA
CCTTNCTCCTCCCATCCCTGTTGTTGATCTTCAGCT

Homology of Contig U35_38850 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01440.1	1416	5e-107	protein\|phosphoribosylformylglycinamidine synthase, putative, expressed
Brachypodium v1_2	Bradi1g32100.1	1299	4e-109
Arabidopsis v10	AT1G74260.1	1407	5e-95	\| Symbols: PUR4 \| purine biosynthesis 4 \| chr1:27923005-27927764 REVERSE LENGTH=1407