barSeed - Barley Seed Development Database

Probe CUST_37546_PI390587928

Source Contig U35_38851

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37546_PI390587928	Hv_44K_v2	TGCTGACCGTAGCCGAGACGTTCACCTTCGCCGCGTCACTGCTTTACCATACGTCGGCGT	412	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353730	2222	2e-24	532 - 591	100	60 / 60	plus	None
MLOC	MLOC_64723.1	753	6e-24	695 - 753	100	59 / 59	plus	None
JLOC1	JLOC1_42526.1	589	8e-25	523 - 582	100	60 / 60	plus
Harvest21	ABC34802	642	3e-25	413 - 472	100	60 / 60	plus
Harvest35	U35_38851	642	3e-25	413 - 472	100	60 / 60	plus

Contig Sequence (642 bp)

>U35_38851 642 Hv_44K_v2
GGGATTCGGCCGAGGGGCACCCATAACACCCCAACTGTCACCGAACCTGACAATGCCGAC
GCGTCTTCGCCACCACCCAAGAACGTCATGTACGAGCTAGCCGCCCGGAACATCTTCTAC
GCGAAGCCGGCTGCGACGCCGACGTTGTCCTTCGGGCGGATCTTGAGGCCATGCGGCGCG
GCCCTTGCGACGCCTGAATACATCCTTCGCGACGTGTCGCTCACGGCGCGGGCGGGAGAG
ATCCTGGCCGTCGTCGGCCCAAGCGGCGCCGGCAAGTCCACGCTGCTCGACATCCTCGCG
GTGCGGACAGCGCCCACCCACGGGCGCCTCCTGCTCAACTCGGCGCCGCTCCGGTCCTCC
TCCTTCCGCCGCCTGTCCGCCCACGTTCCCCAGGCGGACATCGCGCTGTCTCTGCTGACC
GTAGCCGAGACGTTCACCTTCGCCGCGTCACTGCTTTACCATACGTCGGCGTCCGCGGCC
TCGACCGCGGTCACGGCGCTCCTCGCGGACCTCCGTCTGGCGCACGCGGCTCACACGCGG
GTTTCCGCGTCACGGCTATCGGGAGGCGAGCGCCGGCGGGTGTCCATTGGCCTCGCCCTG
CTCCGCGACCCCGGCGTGCTCCTCCTCGATGAGCCGACCTCC

Homology of Contig U35_38851 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g30730.1	625	7e-79	protein\|ABC-2 type transporter domain containing protein, expressed
Brachypodium v1_2	Bradi1g40464.1	632	1e-73
Arabidopsis v10	None