barSeed - Barley Seed Development Database

Probe CUST_3753_PI390587928

Source Contig U35_26347

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3753_PI390587928	Hv_44K_v2	ATCGAGAAGATTGAGTACGAGGACAAGGACAATTTGGTGATCGTCCGTGGGAAATTCGAT	139	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251545.1	1168	2e-24	160 - 219	100	60 / 60	plus	ABC19291
MLOC	MLOC_20573.1	456	2e-24	153 - 212	100	60 / 60	plus	None
JLOC1	JLOC1_14258.1	484	8e-25	181 - 240	100	60 / 60	plus
Harvest21	ABC22837	631	3e-25	140 - 199	100	60 / 60	plus
Harvest35	U35_26347	632	3e-25	140 - 199	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_26347 632 Hv_44K_v2
CTCGCCCATGGGCGCTGCAACCTTCTTCATACTCCAGAGTTGACAGATGGGTATACTGGT
GATTACGGTAGACCTGCAATGCTGCCGCTGCAAGAAGAAGATCAAGAATGTCCTCGAGTG
CCTCCAAGAGGATTTCTGCATCGAGAAGATTGAGTACGAGGACAAGGACAATTTGGTGAT
CGTCCGTGGGAAATTCGATGCCGAGAAGCTCTGCAAAAAGATCTGGTGCAAGGCCTGTAA
GGCCGTCTTGGATTCTTGATCGTAGCAGAATGGCCGGCGCCAAAGCCGCCGGCGGCAAAA
CCATGCCCAGACAAGCCGCCGAAACCATGCACGTGTAAATGCACGCCTCCGCCTGAGACG
CCGAAACCATGCACGTGTAAATGCACGCCTCCGCCTGAGACGCCGAAACCATGCACGTGT
AAATGCACGCCTCCGCCTGAGAAGCCAAAACCATGCCCATGCAAATGCACGCCTCCGCCT
GAGACGCCAAAACCATGTCCCCCGAAGCCATGCACGCCGGCTCCGGCTGAGCCCAAACCA
TGCCCTAAGCCGGAGCCGGAAACGAAACCGCCGCCGCCGCCGCCCAAACCAACATACAAG
TTCGTGCCATACCCGTACCCGGTTCCGTACCC

Homology of Contig U35_26347 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None