barSeed - Barley Seed Development Database

Probe CUST_37526_PI390587928

Source Contig U35_26890

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37526_PI390587928	Hv_44K_v2	ATCCGATACTTTTGCCCTGGACCACGGACGCGATGTTTTTCTTTTTCTTTTTCGATGTTG	594	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39670.1	773	2e-24	586 - 645	100	60 / 60	plus	ABC09699
JLOC1	JLOC1_25880.1	1822	8e-25	1714 - 1773	100	60 / 60	plus
Harvest21	ABC26556	657	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_26890	657	3e-25	595 - 654	100	60 / 60	plus

Contig Sequence (657 bp)

>U35_26890 657 Hv_44K_v2
CTGGGAATCAAGAAGTAAATCCCATACAACTTGTTAACAAGCTGCTTATTTTCGGAAGCT
GAGCAACAACGGTGTAGCTTTTGCCTTGCTGCAGGATGGATAGGATATTGTTATCCACTG
AATCTTCTCCTAACCTGTTCCGAGCAATTCAGAACTGTACGCATGCAGCAACAATTCAAT
TCAGTCTGCATTTCTTGCTGTTGTGGTTTTGCTGACAGTGTGTCTGTTGCTGTTGTTTTT
TTGTGGTGGACGCAGAACATCCACTGCGGGGAGAGCGTGACGATCGAAGGGCAGGCGTAC
ACGGTGTCGGCGGTGACGCACCGGTACCAGCTGCGCAAGGGGCGGTACGAGCCGAGCGAG
AAGCGCCTCGACGTCCTCTCCACCGGCAGATACATCCTCAACCTCTACCTCGACAGCCTC
CTCGACAAGTCCTAGATAATATACTACCACCACCACCACCACCACCACTACTACTACAGA
TTTATCTATTCCAGCAAATTAGTACTGTACGTACGCTACTTGTGTGATGATATAAAAATG
CTTACACAGCAAAAAGTACATGCGCGATGAGCCCACGAACGCACGATCAAAGCGATCCGA
TACTTTTGCCCTGGACCACGGACGCGATGTTTTTCTTTTTCTTTTTCGATGTTGCTT

Homology of Contig U35_26890 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None