barSeed - Barley Seed Development Database

Probe CUST_37524_PI390587928

Source Contig U35_26893

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37524_PI390587928	Hv_44K_v2	ACCGAGGGGGCCAACTGTTGGGGAAAACTCAAGGCGGAGAAGTGTCGGCGCCCGCGTCGC	341	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364104	1744	2e-24	309 - 368	100	60 / 60	plus	ABC21789
MLOC	MLOC_77078.1	620	2e-24	148 - 207	100	60 / 60	minus	None
JLOC1	JLOC1_51407.1	583	8e-25	381 - 440	100	60 / 60	plus
Harvest35	U35_26893	481	3e-25	342 - 401	100	60 / 60	plus

Contig Sequence (481 bp)

>U35_26893 481 Hv_44K_v2
CTTCTTGACTCGTGCCTCGTCCCCCGTCCGCCCTGGTTCCCTCTCCCCGCGCACGAACAT
AGCTCCCCCCCACGCAGCCATGGGCACCAATTTCTCGCAGAACCACCACCTCCAGAACAC
CCACTTCTCGCTCCCCAGGAAGCAATTCCTGGCCTACGCCCTCTACGCCCTCGTCCCCCT
CGCGCTCCTCCATTACCTGCTCTTCAACCCGCTGGCCGCGCCCACACCGCCGGTCCTGGC
CCAGCCGCAGGTGCGAGAGGCGGCGCCGTCCATCGTCCCGCCCCAGCGCGGCCGCGCGCC
CGTGAATGCGCTTGAGGAGCAGCTGCCCCCGCCCCCTCCCGACCGAGGGGGCCAACTGTT
GGGGAAAACTCAAGGCGGAGAAGTGTCGGCGCCCGCGTCGCCGCCGTGCGACTACTCGGA
CGGCGAGTGGGTGCCGGACGCGCGCCCGCCGCTCTACACGGGACGAGCTGCGGCACCATA
A

Homology of Contig U35_26893 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None